added xref, obsolete terms for #27842

src/ontology/go-edit.obo

@@ -338548,33 +338548,40 @@ creation_date: 2012-01-30T03:05:27Z
 
 [Term]
 id: GO:0052870
-name: tocopherol omega-hydroxylase activity
+name: obsolete tocopherol omega-hydroxylase activity
 namespace: molecular_function
-def: "Catalysis of the reaction: tocopherol + O2 + NADPH + H+ = 13'-hydroxy-tocopherol + NADP+ + H2O ." [MetaCyc:RXN-11003]
+def: "OBSOLETE. Catalysis of the reaction: tocopherol + O2 + NADPH + H+ = 13'-hydroxy-tocopherol + NADP+ + H2O ." [MetaCyc:RXN-11003]
+comment: This term was obsoleted because the reaction is not mentioned in the MetaCyc entry cited in the definition cross reference.
 synonym: "tocopherol 13-hydroxylase activity" EXACT systematic_synonym []
-is_a: GO:0016709 ! oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27862" xsd:anyURI
+is_obsolete: true
+consider: GO:0052871
 created_by: ai
 creation_date: 2012-01-30T03:06:27Z
 
 [Term]
 id: GO:0052871
 name: alpha-tocopherol omega-hydroxylase activity
 namespace: molecular_function
-def: "Catalysis of the reaction: alpha-tocopherol + O2 + NADPH + H+ = 13'-hydroxy-alpha-tocopherol + NADP+ + H2O ." [MetaCyc:RXN-11003]
+def: "Catalysis of the reaction: (+)-alpha-tocopherol + O2 + reduced [NADPH--hemoprotein reductase] = 13-hydroxy-alpha-tocopherol + H+ + H2O + oxidized [NADPH--hemoprotein reductase]." [RHEA:45108]
 synonym: "alpha-tocopherol 13-hydroxylase activity" EXACT []
 xref: MetaCyc:RXN-11003
-is_a: GO:0052870 ! tocopherol omega-hydroxylase activity
+xref: RHEA:45108
+is_a: GO:0016712 ! oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27862" xsd:anyURI
 created_by: ai
 creation_date: 2012-01-30T03:06:27Z
 
 [Term]
 id: GO:0052872
-name: tocotrienol omega-hydroxylase activity
+name: obsolete tocotrienol omega-hydroxylase activity
 namespace: molecular_function
-def: "Catalysis of the reaction: tocotrienol + O2 + NADPH + H+ = 13'-hydroxy-tocotrienol + NADP+ + H2O ." [MetaCyc:RXN-11003]
+def: "OBSOLETE. Catalysis of the reaction: tocotrienol + O2 + NADPH + H+ = 13'-hydroxy-tocotrienol + NADP+ + H2O ." [MetaCyc:RXN-11003]
+comment: This term was obsoleted because the reaction is not mentioned in the MetaCyc entry cited in the definition cross reference.
 synonym: "tocotrienol 13-hydroxylase activity" EXACT []
-xref: EC:1.14.13.-
-is_a: GO:0016709 ! oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27862" xsd:anyURI
+is_obsolete: true
+consider: GO:0052871
 created_by: ai
 creation_date: 2012-01-30T03:07:27Z