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obsoleted response terms for #27194 #28473

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Jul 12, 2024
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obsoleted response terms for #27194 #28473

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32 changes: 10 additions & 22 deletions src/ontology/go-edit.obo
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Original file line number Diff line number Diff line change
Expand Up @@ -63407,7 +63407,6 @@ synonym: "cellular modified amino acid metabolism" EXACT [GOC:mah]
synonym: "modified amino acid metabolic process" EXACT [GOC:mah]
synonym: "modified amino acid metabolism" EXACT [GOC:mah]
is_a: GO:0044237 ! cellular metabolic process
is_a: GO:1901564 ! organonitrogen compound metabolic process
intersection_of: GO:0008152 ! metabolic process
intersection_of: has_primary_input_or_output CHEBI:83821 ! amino acid derivative

Expand Down Expand Up @@ -98836,16 +98835,13 @@ is_a: GO:0016491 ! oxidoreductase activity

[Term]
id: GO:0010243
name: response to organonitrogen compound
name: obsolete response to organonitrogen compound
namespace: biological_process
def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond." [PMID:9869419]
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
subset: gocheck_do_not_annotate
def: "OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond." [PMID:9869419]
comment: This term was obsoleted because it represents an unnecessary grouping class.
synonym: "response to organic nitrogen" EXACT []
is_a: GO:0050896 ! response to stimulus
intersection_of: GO:0050896 ! response to stimulus
intersection_of: has_primary_input CHEBI:35352 ! organonitrogen compound
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27194" xsd:anyURI
is_obsolete: true

[Term]
id: GO:0010244
Expand Down Expand Up @@ -236902,7 +236898,6 @@ synonym: "indole derivative metabolism" NARROW []
synonym: "indole-containing compound metabolism" EXACT []
synonym: "ketole metabolic process" EXACT []
synonym: "ketole metabolism" EXACT []
is_a: GO:1901564 ! organonitrogen compound metabolic process
intersection_of: GO:0008152 ! metabolic process
intersection_of: has_primary_input_or_output CHEBI:24828 ! indoles

Expand Down Expand Up @@ -338707,7 +338702,6 @@ name: imidazole-containing compound metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving imidazoles, five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton." [GOC:curators]
synonym: "imidazole metabolism" EXACT []
is_a: GO:1901564 ! organonitrogen compound metabolic process
intersection_of: GO:0008152 ! metabolic process
intersection_of: has_primary_input_or_output CHEBI:24780 ! imidazoles

Expand Down Expand Up @@ -380715,13 +380709,13 @@ creation_date: 2009-12-14T03:12:24Z

[Term]
id: GO:0071417
name: cellular response to organonitrogen compound
name: obsolete cellular response to organonitrogen compound
namespace: biological_process
def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond." [GOC:mah]
def: "OBSOLETE. Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond." [GOC:mah]
comment: This term was obsoleted because it represents an unnecessary grouping class.
synonym: "cellular response to organic nitrogen" EXACT [GOC:mah]
is_a: GO:0071495 ! cellular response to endogenous stimulus
intersection_of: GO:0070887 ! cellular response to chemical stimulus
intersection_of: has_primary_input CHEBI:35352 ! organonitrogen compound
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27194" xsd:anyURI
is_obsolete: true
created_by: mah
creation_date: 2009-12-14T04:07:27Z

Expand Down Expand Up @@ -395145,7 +395139,7 @@ id: GO:0072739
name: response to anisomycin
namespace: biological_process
def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an anisomycin stimulus." [GOC:mah]
is_a: GO:0010243 ! response to organonitrogen compound
is_a: GO:0042221 ! response to chemical
created_by: mah
creation_date: 2012-07-17T10:33:00Z

Expand All @@ -395154,7 +395148,6 @@ id: GO:0072740
name: cellular response to anisomycin
namespace: biological_process
def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an anisomycin stimulus." [GOC:mah]
is_a: GO:0071417 ! cellular response to organonitrogen compound
is_a: GO:0072739 ! response to anisomycin
created_by: mah
creation_date: 2012-07-17T10:33:00Z
Expand Down Expand Up @@ -395372,7 +395365,6 @@ name: cellular response to capsazepine
namespace: biological_process
def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a capsazepine stimulus." [GOC:mah]
is_a: GO:0071407 ! cellular response to organic cyclic compound
is_a: GO:0071417 ! cellular response to organonitrogen compound
is_a: GO:1901594 ! response to capsazepine
created_by: mah
creation_date: 2012-11-09T11:47:53Z
Expand All @@ -395383,7 +395375,6 @@ name: cellular response to carbendazim
namespace: biological_process
def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbendazim stimulus." [GOC:mah]
is_a: GO:0071407 ! cellular response to organic cyclic compound
is_a: GO:0071417 ! cellular response to organonitrogen compound
is_a: GO:1901597 ! response to carbendazim
created_by: mah
creation_date: 2012-11-09T11:48:11Z
Expand Down Expand Up @@ -405835,7 +405826,6 @@ synonym: "regulation of transcription by nitrogen catabolites" EXACT [GOC:mah]
is_a: GO:0006355 ! regulation of DNA-templated transcription
is_a: GO:0006808 ! regulation of nitrogen utilization
is_a: GO:0031670 ! cellular response to nutrient
relationship: part_of GO:0071417 ! cellular response to organonitrogen compound
created_by: tb
creation_date: 2010-02-24T02:31:53Z

Expand Down Expand Up @@ -486996,7 +486986,6 @@ name: primary amino compound metabolic process
namespace: biological_process
def: "The chemical reactions and pathways involving primary amino compound." [GOC:TermGenie]
synonym: "primary amino compound metabolism" EXACT [GOC:TermGenie]
is_a: GO:1901564 ! organonitrogen compound metabolic process
intersection_of: GO:0008152 ! metabolic process
intersection_of: has_primary_input_or_output CHEBI:50994 ! primary amino compound
created_by: bf
Expand Down Expand Up @@ -493985,7 +493974,6 @@ synonym: "organonitrogen compound anabolism" EXACT [GOC:TermGenie]
synonym: "organonitrogen compound biosynthesis" EXACT [GOC:TermGenie]
synonym: "organonitrogen compound formation" EXACT [GOC:TermGenie]
synonym: "organonitrogen compound synthesis" EXACT [GOC:TermGenie]
is_a: GO:1901564 ! organonitrogen compound metabolic process
intersection_of: GO:0009058 ! biosynthetic process
intersection_of: has_primary_output CHEBI:35352 ! organonitrogen compound
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI
Expand Down
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