fixed dioxygen fixes #29033

[pgaudet]

No description provided.

[github-actions]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-10-11/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-10-11/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

ecdysteroid 2-hydroxylase activity http://purl.obolibrary.org/obo/GO_0042768

Removed

• ecdysteroid 2-hydroxylase activity definition "Catalysis of the reaction: 2-deoxyecdysone + 2 reduced adrenodoxin + dioxygen + 2 H+ = ecdysone + 2 oxidized adrenodoxin + H2O."

  • database_cross_reference "PMID:12177427"

  • database_cross_reference "MetaCyc:RXN-14679"

Added

• ecdysteroid 2-hydroxylase activity definition "Catalysis of the reaction: 2-deoxyecdysone + 2 reduced adrenodoxin + O2 + 2 H+ = ecdysone + 2 oxidized adrenodoxin + H2O."

  • database_cross_reference "PMID:12177427"

  • database_cross_reference "MetaCyc:RXN-14679"

glycerophosphate shuttle http://purl.obolibrary.org/obo/GO_0006127

Removed

• glycerophosphate shuttle definition "The process of transferring reducing equivalents from the cytosol into the mitochondria; NADH is used to synthesise glycerol 3-phosphate in the cytosol; this compound is then transported into the mitochondria where it is converted to dihydroxyacetone phosphate (DHAP) using FAD; DHAP then returns to the cytosol to complete the cycle."

  • database_cross_reference "GOC:jl"

  • database_cross_reference "GOC:mtg_electron_transport"

  • database_cross_reference "PMID:16368075"

  • database_cross_reference "ISBN:0716720094"

Added

• glycerophosphate shuttle definition "The process of transferring reducing equivalents from the cytosol into the mitochondria; NADH is used to synthesize glycerol 3-phosphate in the cytosol; this compound is then transported into the mitochondria where it is converted to dihydroxyacetone phosphate (DHAP) using FAD; DHAP then returns to the cytosol to complete the cycle."

  • database_cross_reference "GOC:jl"

  • database_cross_reference "GOC:mtg_electron_transport"

  • database_cross_reference "PMID:16368075"

  • database_cross_reference "ISBN:0716720094"

malate-aspartate shuttle http://purl.obolibrary.org/obo/GO_0043490

Removed

• malate-aspartate shuttle definition "The process of transferring reducing equivalents from the cytosol into the mitochondria; NADH is used to synthesise malate in the cytosol; this compound is then transported into the mitochondria where it is converted to oxaloacetate using NADH, the oxaloacetate reacts with gluamate to form aspartate, and the aspartate then returns to the cytosol to complete the cycle."

  • database_cross_reference "GOC:jl"

  • database_cross_reference "GOC:mtg_electron_transport"

  • database_cross_reference "ISBN:0716743663"

Added

• malate-aspartate shuttle definition "The process of transferring reducing equivalents from the cytosol into the mitochondria; NADH is used to synthesize malate in the cytosol; this compound is then transported into the mitochondria where it is converted to oxaloacetate using NADH, the oxaloacetate reacts with gluamate to form aspartate, and the aspartate then returns to the cytosol to complete the cycle."

  • database_cross_reference "GOC:jl"

  • database_cross_reference "GOC:mtg_electron_transport"

  • database_cross_reference "ISBN:0716743663"

serotonin secretion http://purl.obolibrary.org/obo/GO_0001820

Removed

• serotonin secretion definition "The regulated release of serotonin by a cell. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesised in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells."

  • database_cross_reference "ISBN:0781735149"

  • database_cross_reference "GOC:ef"

  • database_cross_reference "ISBN:0198506732"

Added

• serotonin secretion definition "The regulated release of serotonin by a cell. Serotonin (5-hydroxytryptamine, or 5-HT) is a monoamine synthesized in serotonergic neurons in the central nervous system, enterochromaffin cells in the gastrointestinal tract and some immune system cells."

  • database_cross_reference "ISBN:0781735149"

  • database_cross_reference "GOC:ef"

  • database_cross_reference "ISBN:0198506732"

tetrahydrofolate interconversion http://purl.obolibrary.org/obo/GO_0035999

Removed

• tetrahydrofolate interconversion definition "The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules."

  • database_cross_reference "GOC:yaf"

  • database_cross_reference "PMID:1825999"

Added

• tetrahydrofolate interconversion definition "The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesize other tetrahydrofolate molecules."

  • database_cross_reference "GOC:yaf"

  • database_cross_reference "PMID:1825999"