Issue 29420

[sjm41]

No description provided.

[github-actions]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-11/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-11/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

2-methoxy-6-polyprenyl-1,4-benzoquinol methyltransferase activity http://purl.obolibrary.org/obo/GO_0008425

Removed

• 2-methoxy-6-polyprenyl-1,4-benzoquinol methyltransferase activity definition "Catalysis of the reaction: 2-polyprenyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-methionine = 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone + S-adenosyl-L-homocysteine."

  • database_cross_reference "GOC:kd"

  • database_cross_reference "PMID:9083048"

  • database_cross_reference "PMID:23190198"

• 2-methoxy-6-polyprenyl-1,4-benzoquinol methyltransferase activity label "2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity"

Added

• 2-methoxy-6-polyprenyl-1,4-benzoquinol methyltransferase activity label "2-methoxy-6-polyprenyl-1,4-benzoquinol methyltransferase activity"

• 2-methoxy-6-polyprenyl-1,4-benzoquinol methyltransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29420"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• 2-methoxy-6-polyprenyl-1,4-benzoquinol methyltransferase activity has_exact_synonym "2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity"

• 2-methoxy-6-polyprenyl-1,4-benzoquinol methyltransferase activity definition "Catalysis of the reaction: a 2-methoxy-6-all-trans-polyprenyl-1,4-benzoquinol + S-adenosyl-L-methionine = a 6-methoxy-3-methyl-2-all-trans-polyprenyl-1,4-benzoquinol + S-adenosyl-L-homocysteine + H+."

  • database_cross_reference "PMID:9083048"

  • database_cross_reference "RHEA:28286"

  • database_cross_reference "PMID:23190198"

3-demethoxyubiquinol 3-hydroxylase activity http://purl.obolibrary.org/obo/GO_0008682

Removed

• 3-demethoxyubiquinol 3-hydroxylase activity definition "Catalysis of the reaction: a 6-methoxy-3-methyl-2-all-trans-polyprenyl-1,4-benzoquinol + AH2 + O2 = A + a 3-demethylubiquinol + H2O."
  • database_cross_reference "RHEA:50908"

Added

• 3-demethoxyubiquinol 3-hydroxylase activity definition "Catalysis of the reaction: a 6-methoxy-3-methyl-2-all-trans-polyprenyl-1,4-benzoquinol + donor-H2 + O2 = acceptor + a 3-demethylubiquinol + H2O."
  • database_cross_reference "RHEA:50908"

3-demethylubiquinol 3-O-methyltransferase activity http://purl.obolibrary.org/obo/GO_0061542

Removed

• 3-demethylubiquinol 3-O-methyltransferase activity definition "Catalysis of the reaction: S-adenosyl-L-methionine + a 3-demethylubiquinol = S-adenosyl-L-homocysteine + a ubiquinol."

  • database_cross_reference "GOC:dph"

  • database_cross_reference "PMID:23190198"

  • database_cross_reference "PMID:10777520"

  • database_cross_reference "RHEA:44380"

• 3-demethylubiquinol 3-O-methyltransferase activity label "3-demethylubiquinol-n 3-O-methyltransferase activity"

Added

• 3-demethylubiquinol 3-O-methyltransferase activity has_exact_synonym "3-demethylubiquinol-n 3-O-methyltransferase activity"

• 3-demethylubiquinol 3-O-methyltransferase activity definition "Catalysis of the reaction: a 3-demethylubiquinol + S-adenosyl-L-methionine = a ubiquinol + S-adenosyl-L-homocysteine + H+."

  • database_cross_reference "PMID:23190198"

  • database_cross_reference "PMID:10777520"

  • database_cross_reference "RHEA:44380"

• 3-demethylubiquinol 3-O-methyltransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29420"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• 3-demethylubiquinol 3-O-methyltransferase activity label "3-demethylubiquinol 3-O-methyltransferase activity"

polyprenyldihydroxybenzoate methyltransferase activity http://purl.obolibrary.org/obo/GO_0010420

Removed

• polyprenyldihydroxybenzoate methyltransferase activity definition "Catalysis of the reaction: 3,4-dihydroxy-5-polyprenylbenzoic acid + S-adenosyl-L-methionine = 3-methoxy-4-hydroxy-5-polyprenylbenzoic acid + S-adenosyl-L-homocysteine + H+."

  • database_cross_reference "PMID:10419476"

  • database_cross_reference "RHEA:44452"

  • database_cross_reference "PMID:23190198"

  • database_cross_reference "PMID:9628017"

• polyprenyldihydroxybenzoate methyltransferase activity has_related_synonym "polyprenyldihydroxybenzoate methyltransferase activity"

• polyprenyldihydroxybenzoate methyltransferase activity label "3,4-dihydroxy-5-polyprenylbenzoic acid O-methyltransferase activity"

Added

• polyprenyldihydroxybenzoate methyltransferase activity label "polyprenyldihydroxybenzoate methyltransferase activity"

• polyprenyldihydroxybenzoate methyltransferase activity definition "Catalysis of the reaction: a 3,4-dihydroxy-5-all-trans-polyprenylbenzoate + S-adenosyl-L-methionine = a 3-methoxy,4-hydroxy-5-all-trans-polyprenylbenzoate + S-adenosyl-L-homocysteine + H+."

  • database_cross_reference "PMID:10419476"

  • database_cross_reference "RHEA:44452"

  • database_cross_reference "PMID:23190198"

  • database_cross_reference "PMID:9628017"

• polyprenyldihydroxybenzoate methyltransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29420"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• polyprenyldihydroxybenzoate methyltransferase activity has_exact_synonym "3,4-dihydroxy-5-polyprenylbenzoic acid O-methyltransferase activity"

  • database_cross_reference "EC:2.1.1.114"