Obsoleted 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase …

[raymond91125]

…activity; #29459.

[github-actions]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-21/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-21/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase activity http://purl.obolibrary.org/obo/GO_0036169

Removed

• 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase activity definition "Catalysis of the reaction: 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid -> 2-methoxy-6-decaprenylphenol + CO2."

  • database_cross_reference "PMID:7028108"

  • database_cross_reference "PMID:620805"

  • database_cross_reference "GOC:mw"

• 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase activity label "3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase activity"

• 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase activity SubClassOf carboxy-lyase activity

Added

• 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase activity definition "OBSOLETE. Catalysis of the reaction: 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid -> 2-methoxy-6-decaprenylphenol + CO2."

  • database_cross_reference "PMID:7028108"

  • database_cross_reference "PMID:620805"

  • database_cross_reference "GOC:mw"

• 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase activity term replaced by "GO:0120539"

• 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29459"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase activity label "obsolete 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase activity"

• 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase activity deprecated true

• 3-methoxy-4-hydroxy-5-decaprenylbenzoic acid decarboxylase activity comment "The reason for obsoletion is that this term is equivalent to 4-hydroxy-3-methoxy-5-polyprenylbenzoate decarboxylase activity."