Obsoleted 11 terms; #23779.

[raymond91125]

No description provided.

[github-actions]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-21/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-21/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

RNA polymerase I activity http://purl.obolibrary.org/obo/GO_0001054

Removed

• RNA polymerase I activity database_cross_reference "EC:2.7.7.6"
  • source "skos:broadMatch"

Added

• RNA polymerase I activity term tracker item "https://github.com/geneontology/go-ontology/issues/23779"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

RNA polymerase III complex http://purl.obolibrary.org/obo/GO_0005666

Removed

• RNA polymerase III complex EquivalentTo DNA-directed RNA polymerase complex and (part_of some nucleus) and (capable of some obsolete RNA polymerase III activity)

• RNA polymerase III complex SubClassOf capable of some obsolete RNA polymerase III activity

RNA polymerase IV complex http://purl.obolibrary.org/obo/GO_0000418

Removed

• RNA polymerase IV complex EquivalentTo DNA-directed RNA polymerase complex and (part_of some nucleus) and (capable of some obsolete RNA polymerase IV activity)

• RNA polymerase IV complex SubClassOf capable of some obsolete RNA polymerase IV activity

RNA polymerase V complex http://purl.obolibrary.org/obo/GO_0000419

Removed

• RNA polymerase V complex EquivalentTo DNA-directed RNA polymerase complex and (part_of some nucleus) and (capable of some obsolete RNA polymerase V activity)

• RNA polymerase V complex SubClassOf capable of some obsolete RNA polymerase V activity

alpha DNA polymerase:primase complex http://purl.obolibrary.org/obo/GO_0005658

Removed

• alpha DNA polymerase:primase complex SubClassOf capable of some obsolete DNA primase activity

obsolete DNA primase activity http://purl.obolibrary.org/obo/GO_0003896

Removed

• obsolete DNA primase activity database_cross_reference "EC:2.7.7.102"

  • source "skos:narrowMatch"

• obsolete DNA primase activity label "DNA primase activity"

• obsolete DNA primase activity database_cross_reference "EC:2.7.7.101"

  • source "skos:narrowMatch"

• obsolete DNA primase activity definition "Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. In certain conditions, for example in response to DNA damage, some primases synthesize a DNA primer."

  • database_cross_reference "GOC:mah"

  • database_cross_reference "GOC:mcc"

  • database_cross_reference "PMID:38492718"

  • database_cross_reference "PMID:11395402"

  • database_cross_reference "PMID:26184436"

  • database_cross_reference "PMID:38203225"

• obsolete DNA primase activity SubClassOf part_of some DNA replication, synthesis of primer

• obsolete DNA primase activity SubClassOf DNA-directed 5'-3' RNA polymerase activity

Added

• obsolete DNA primase activity comment "The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity."

• obsolete DNA primase activity deprecated true

• obsolete DNA primase activity label "obsolete DNA primase activity"

• obsolete DNA primase activity definition "OBSOLETE. Catalysis of the synthesis of a short RNA primer on a DNA template, providing a free 3'-OH that can be extended by DNA-directed DNA polymerases. In certain conditions, for example in response to DNA damage, some primases synthesize a DNA primer."

  • database_cross_reference "GOC:mah"

  • database_cross_reference "GOC:mcc"

  • database_cross_reference "PMID:38492718"

  • database_cross_reference "PMID:11395402"

  • database_cross_reference "PMID:26184436"

  • database_cross_reference "PMID:38203225"

• obsolete DNA primase activity term replaced by "GO:0003899"

• obsolete DNA primase activity term tracker item "https://github.com/geneontology/go-ontology/issues/23779"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

obsolete RNA polymerase II activity http://purl.obolibrary.org/obo/GO_0001055

Removed

• obsolete RNA polymerase II activity definition "Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "GOC:txnOH"

• obsolete RNA polymerase II activity label "RNA polymerase II activity"

• obsolete RNA polymerase II activity database_cross_reference "EC:2.7.7.6"

  • source "skos:broadMatch"

• obsolete RNA polymerase II activity EquivalentTo DNA-directed 5'-3' RNA polymerase activity and (part_of some transcription by RNA polymerase II)

• obsolete RNA polymerase II activity SubClassOf DNA-directed 5'-3' RNA polymerase activity

• obsolete RNA polymerase II activity SubClassOf occurs in some chromatin

• obsolete RNA polymerase II activity SubClassOf part_of some transcription by RNA polymerase II

Added

• obsolete RNA polymerase II activity definition "OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "GOC:txnOH"

• obsolete RNA polymerase II activity label "obsolete RNA polymerase II activity"

• obsolete RNA polymerase II activity comment "The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity."

• obsolete RNA polymerase II activity deprecated true

• obsolete RNA polymerase II activity term tracker item "https://github.com/geneontology/go-ontology/issues/23779"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete RNA polymerase II activity term replaced by "GO:0003899"

obsolete RNA polymerase III activity http://purl.obolibrary.org/obo/GO_0001056

Removed

• obsolete RNA polymerase III activity database_cross_reference "EC:2.7.7.6"

  • source "skos:broadMatch"

• obsolete RNA polymerase III activity label "RNA polymerase III activity"

• obsolete RNA polymerase III activity definition "Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "GOC:txnOH"

• obsolete RNA polymerase III activity EquivalentTo DNA-directed 5'-3' RNA polymerase activity and (part_of some transcription by RNA polymerase III)

• obsolete RNA polymerase III activity SubClassOf occurs in some chromatin

• obsolete RNA polymerase III activity SubClassOf DNA-directed 5'-3' RNA polymerase activity

• obsolete RNA polymerase III activity SubClassOf part_of some transcription by RNA polymerase III

Added

• obsolete RNA polymerase III activity label "obsolete RNA polymerase III activity"

• obsolete RNA polymerase III activity term replaced by "GO:0003899"

• obsolete RNA polymerase III activity definition "OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "GOC:txnOH"

• obsolete RNA polymerase III activity comment "The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity."

• obsolete RNA polymerase III activity term tracker item "https://github.com/geneontology/go-ontology/issues/23779"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete RNA polymerase III activity deprecated true

obsolete RNA polymerase IV activity http://purl.obolibrary.org/obo/GO_0001057

Removed

• obsolete RNA polymerase IV activity database_cross_reference "EC:2.7.7.6"

  • source "skos:broadMatch"

• obsolete RNA polymerase IV activity label "RNA polymerase IV activity"

• obsolete RNA polymerase IV activity definition "Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase IV specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "GOC:txnOH"

• obsolete RNA polymerase IV activity EquivalentTo DNA-directed 5'-3' RNA polymerase activity and (part_of some transcription by RNA polymerase IV)

• obsolete RNA polymerase IV activity SubClassOf occurs in some chromatin

• obsolete RNA polymerase IV activity SubClassOf part_of some transcription by RNA polymerase IV

• obsolete RNA polymerase IV activity SubClassOf DNA-directed 5'-3' RNA polymerase activity

Added

• obsolete RNA polymerase IV activity term tracker item "https://github.com/geneontology/go-ontology/issues/23779"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete RNA polymerase IV activity term replaced by "GO:0003899"

• obsolete RNA polymerase IV activity definition "OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase IV specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "GOC:txnOH"

• obsolete RNA polymerase IV activity comment "The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity."

• obsolete RNA polymerase IV activity deprecated true

• obsolete RNA polymerase IV activity label "obsolete RNA polymerase IV activity"

obsolete RNA polymerase V activity http://purl.obolibrary.org/obo/GO_0001058

Removed

• obsolete RNA polymerase V activity definition "Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase V specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "GOC:txnOH"

• obsolete RNA polymerase V activity label "RNA polymerase V activity"

• obsolete RNA polymerase V activity database_cross_reference "EC:2.7.7.6"

  • source "skos:broadMatch"

• obsolete RNA polymerase V activity EquivalentTo DNA-directed 5'-3' RNA polymerase activity and (part_of some transcription by RNA polymerase V)

• obsolete RNA polymerase V activity SubClassOf DNA-directed 5'-3' RNA polymerase activity

• obsolete RNA polymerase V activity SubClassOf part_of some transcription by RNA polymerase V

• obsolete RNA polymerase V activity SubClassOf occurs in some chromatin

Added

• obsolete RNA polymerase V activity term replaced by "GO:0003899"

• obsolete RNA polymerase V activity term tracker item "https://github.com/geneontology/go-ontology/issues/23779"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete RNA polymerase V activity definition "OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase V specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "GOC:txnOH"

• obsolete RNA polymerase V activity label "obsolete RNA polymerase V activity"

• obsolete RNA polymerase V activity deprecated true

• obsolete RNA polymerase V activity comment "The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity."

obsolete mitochondrial single subunit type RNA polymerase activity http://purl.obolibrary.org/obo/GO_0001065

Removed

• obsolete mitochondrial single subunit type RNA polymerase activity label "mitochondrial single subunit type RNA polymerase activity"

• obsolete mitochondrial single subunit type RNA polymerase activity definition "Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single-subunit-type mitochondrial RNA polymerase-specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "GOC:txnOH"

• obsolete mitochondrial single subunit type RNA polymerase activity database_cross_reference "EC:2.7.7.6"

  • source "skos:broadMatch"

• obsolete mitochondrial single subunit type RNA polymerase activity EquivalentTo obsolete single subunit type RNA polymerase activity and (part_of some mitochondrial transcription)

• obsolete mitochondrial single subunit type RNA polymerase activity SubClassOf obsolete single subunit type RNA polymerase activity

• obsolete mitochondrial single subunit type RNA polymerase activity SubClassOf part_of some mitochondrial transcription

Added

• obsolete mitochondrial single subunit type RNA polymerase activity comment "The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity."

• obsolete mitochondrial single subunit type RNA polymerase activity definition "OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single-subunit-type mitochondrial RNA polymerase-specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "GOC:txnOH"

• obsolete mitochondrial single subunit type RNA polymerase activity deprecated true

• obsolete mitochondrial single subunit type RNA polymerase activity term replaced by "GO:0003899"

• obsolete mitochondrial single subunit type RNA polymerase activity term tracker item "https://github.com/geneontology/go-ontology/issues/23779"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete mitochondrial single subunit type RNA polymerase activity label "obsolete mitochondrial single subunit type RNA polymerase activity"

obsolete negative regulation of RNA polymerase III activity http://purl.obolibrary.org/obo/GO_1903623

Removed

• obsolete negative regulation of RNA polymerase III activity in_subset gocheck_obsoletion_candidate

• obsolete negative regulation of RNA polymerase III activity label "negative regulation of RNA polymerase III activity"

• obsolete negative regulation of RNA polymerase III activity definition "Any process that stops, prevents or reduces the frequency, rate or extent of RNA polymerase III activity."

  • database_cross_reference "GOC:TermGenie"

  • database_cross_reference "PMID:25392932"

  • database_cross_reference "GO_REF:0000059"

• obsolete negative regulation of RNA polymerase III activity EquivalentTo biological regulation and (negatively regulates some obsolete RNA polymerase III activity)

• obsolete negative regulation of RNA polymerase III activity SubClassOf negative regulation of transcription by RNA polymerase III

• obsolete negative regulation of RNA polymerase III activity SubClassOf negative regulation of transferase activity

• obsolete negative regulation of RNA polymerase III activity SubClassOf negatively regulates some obsolete RNA polymerase III activity

Added

• obsolete negative regulation of RNA polymerase III activity label "obsolete negative regulation of RNA polymerase III activity"

• obsolete negative regulation of RNA polymerase III activity term tracker item "https://github.com/geneontology/go-ontology/issues/23779"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete negative regulation of RNA polymerase III activity comment "This term was obsoleted because it represents a molecular function."

• obsolete negative regulation of RNA polymerase III activity deprecated true

• obsolete negative regulation of RNA polymerase III activity definition "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of RNA polymerase III activity."

  • database_cross_reference "GOC:TermGenie"

  • database_cross_reference "PMID:25392932"

  • database_cross_reference "GO_REF:0000059"

obsolete plastid single subunit type RNA polymerase activity http://purl.obolibrary.org/obo/GO_0001066

Removed

• obsolete plastid single subunit type RNA polymerase activity definition "Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single subunit type plastid RNA polymerase specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "PMID:20701995"

  • database_cross_reference "GOC:txnOH"

• obsolete plastid single subunit type RNA polymerase activity database_cross_reference "EC:2.7.7.6"

  • source "skos:broadMatch"

• obsolete plastid single subunit type RNA polymerase activity label "plastid single subunit type RNA polymerase activity"

• obsolete plastid single subunit type RNA polymerase activity SubClassOf part_of some plastid transcription

• obsolete plastid single subunit type RNA polymerase activity SubClassOf obsolete single subunit type RNA polymerase activity

Added

• obsolete plastid single subunit type RNA polymerase activity term replaced by "GO:0003899"

• obsolete plastid single subunit type RNA polymerase activity deprecated true

• obsolete plastid single subunit type RNA polymerase activity comment "The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity."

• obsolete plastid single subunit type RNA polymerase activity definition "OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single subunit type plastid RNA polymerase specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "PMID:20701995"

  • database_cross_reference "GOC:txnOH"

• obsolete plastid single subunit type RNA polymerase activity term tracker item "https://github.com/geneontology/go-ontology/issues/23779"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete plastid single subunit type RNA polymerase activity label "obsolete plastid single subunit type RNA polymerase activity"

obsolete positive regulation of DNA primase activity http://purl.obolibrary.org/obo/GO_1903934

Removed

• obsolete positive regulation of DNA primase activity label "positive regulation of DNA primase activity"

• obsolete positive regulation of DNA primase activity definition "Any process that activates or increases the frequency, rate or extent of DNA primase activity."

  • database_cross_reference "GOC:TermGenie"

  • database_cross_reference "GO_REF:0000059"

  • database_cross_reference "PMID:14766746"

• obsolete positive regulation of DNA primase activity in_subset gocheck_obsoletion_candidate

• obsolete positive regulation of DNA primase activity EquivalentTo biological regulation and (positively regulates some obsolete DNA primase activity)

• obsolete positive regulation of DNA primase activity SubClassOf positive regulation of DNA metabolic process

• obsolete positive regulation of DNA primase activity SubClassOf positive regulation of RNA biosynthetic process

• obsolete positive regulation of DNA primase activity SubClassOf positively regulates some obsolete DNA primase activity

• obsolete positive regulation of DNA primase activity SubClassOf positive regulation of transferase activity

Added

• obsolete positive regulation of DNA primase activity label "obsolete positive regulation of DNA primase activity"

• obsolete positive regulation of DNA primase activity term tracker item "https://github.com/geneontology/go-ontology/issues/23779"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete positive regulation of DNA primase activity deprecated true

• obsolete positive regulation of DNA primase activity comment "This term was obsoleted because it represents a molecular function."

• obsolete positive regulation of DNA primase activity definition "OBSOLETE. Any process that activates or increases the frequency, rate or extent of DNA primase activity."

  • database_cross_reference "GOC:TermGenie"

  • database_cross_reference "GO_REF:0000059"

  • database_cross_reference "PMID:14766746"

obsolete single subunit type RNA polymerase activity http://purl.obolibrary.org/obo/GO_0001064

Removed

• obsolete single subunit type RNA polymerase activity label "single subunit type RNA polymerase activity"

• obsolete single subunit type RNA polymerase activity definition "Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single-subunit-type RNA polymerase-specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "GOC:txnOH"

• obsolete single subunit type RNA polymerase activity SubClassOf DNA-directed 5'-3' RNA polymerase activity

Added

• obsolete single subunit type RNA polymerase activity term replaced by "GO:0003899"

• obsolete single subunit type RNA polymerase activity label "obsolete single subunit type RNA polymerase activity"

• obsolete single subunit type RNA polymerase activity term tracker item "https://github.com/geneontology/go-ontology/issues/23779"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete single subunit type RNA polymerase activity definition "OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single-subunit-type RNA polymerase-specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'."

  • database_cross_reference "GOC:txnOH"

• obsolete single subunit type RNA polymerase activity comment "The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity."

• obsolete single subunit type RNA polymerase activity deprecated true