Update GEOS-Chem and dependencies in .gitmodules #242

	name: Pushed commit workflow

	#For some reason GitHub does not allow secrets
	#when a PR from a fork is closed. Thus instead
	#the workflow must activate whenever a commit
	#is pushed to the repo. Theoretically this should
	#behave the same way as if triggered from a pull
	#request, just as long as no user ever pushes
	#directly to the repo.
	on: push

	jobs:
	#This job is designed to close any issues or pull requests specified
	#in the body of a pull request merged into a non-default branch.
	issue_closer:
	runs-on: ubuntu-latest
	steps:
	# acquire github action routines
	- uses: actions/checkout@v3
	# acquire specific version of python
	- name: Set up Python 3.10
	if: github.repository == 'ESCOMP/CAM' #Only run on main repo
	uses: actions/setup-python@v4
	with:
	python-version: '3.10' # Semantic version range syntax or exact version of a Python version
	# install required python packages
	- name: Install dependencies
	if: github.repository == 'ESCOMP/CAM' #Only run on main repo
	run: \|
	python -m pip install --upgrade pip # Install latest version of PIP
	pip install PyGithub # Install PyGithub python package
	# run CAM issue-closing script
	- name: python action scripts
	if: github.repository == 'ESCOMP/CAM' #Only run on main repo
	env:
	ACCESS_TOKEN: ${{ secrets.WRITE_ACCESS_TOKEN }}
	TRIGGER_SHA: ${{ github.sha }}
	run: .github/scripts/branch_pr_issue_closer.py --access_token $ACCESS_TOKEN --trigger_sha $TRIGGER_SHA

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