ref(pymongo): Change span operation from `db.query` to `db` #2688

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Run time

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Job	Run time
GraphQL (latest) (3.7, ubuntu-20.04)	1m 26s
GraphQL (latest) (3.8, ubuntu-20.04)	1m 37s
GraphQL (pinned) (3.7, ubuntu-20.04)	1m 35s
GraphQL (pinned) (3.8, ubuntu-20.04)	1m 36s
GraphQL (pinned) (3.11, ubuntu-20.04)	2m 14s
GraphQL (latest) (3.11, ubuntu-20.04)	2m 7s
GraphQL (latest) (3.12, ubuntu-20.04)	2m 21s
All GraphQL tests passed	1s
	12m 57s