Config fix for default transformations (#50)

* config fix for overwritten default transformations * version bump
ghga-de · Jul 29, 2024 · 76722f3 · 76722f3
1 parent 1e9fefc
commit 76722f3
Show file tree

Hide file tree

Showing 5 changed files with 12 additions and 4 deletions.
diff --git a/.github/workflows/pypi_publish.yaml b/.github/workflows/pypi_publish.yaml
@@ -6,7 +6,7 @@ jobs:
   call-pypi-publish:
     uses: ghga-de/gh-action-pypi/.github/workflows/pypi_publish.yml@v2.0.0
     with:
-      package_version: 2.2.0
+      package_version: 2.2.1
       test_pypi: "false"
       python_latest: false
     secrets: inherit
diff --git a/.pyproject_generation/pyproject_custom.toml b/.pyproject_generation/pyproject_custom.toml
@@ -1,7 +1,7 @@
 [project]
 name = "ghga_transpiler"
 
-version = "2.2.0"
+version = "2.2.1"
 description = "GHGA-Transpiler - excel to JSON converter"
 dependencies = [
     "typer >= 0.12",

diff --git a/pyproject.toml b/pyproject.toml
@@ -21,7 +21,7 @@ classifiers = [
     "Intended Audience :: Developers",
 ]
 name = "ghga_transpiler"
-version = "2.2.0"
+version = "2.2.1"
 description = "GHGA-Transpiler - excel to JSON converter"
 dependencies = [
     "typer >= 0.12",

diff --git a/src/ghga_transpiler/__init__.py b/src/ghga_transpiler/__init__.py
@@ -18,7 +18,7 @@
 
 from openpyxl.xml import DEFUSEDXML
 
-__version__ = "2.2.0"
+__version__ = "2.2.1"
 
 if not DEFUSEDXML:
     raise RuntimeError(

diff --git a/src/ghga_transpiler/configs/2.0.yaml b/src/ghga_transpiler/configs/2.0.yaml
@@ -39,6 +39,8 @@ worksheets:
           !!python/object/apply:ghga_transpiler.transformations.to_attributes []
         types:
           !!python/object/apply:ghga_transpiler.transformations.to_snake_case_list []
+        attributes:
+          !!python/object/apply:ghga_transpiler.transformations.to_attributes []
     sheet_name: Study
   - settings:
       end_column: 10
@@ -84,6 +86,8 @@ worksheets:
           !!python/object/apply:ghga_transpiler.transformations.to_snake_case []
         biospecimen_storage:
           !!python/object/apply:ghga_transpiler.transformations.to_snake_case []
+        attributes:
+          !!python/object/apply:ghga_transpiler.transformations.to_attributes []
     sheet_name: Sample
   - settings:
       end_column: 23
@@ -113,6 +117,8 @@ worksheets:
           !!python/object/apply:ghga_transpiler.transformations.to_snake_case []
         sequencing_layout:
           !!python/object/apply:ghga_transpiler.transformations.to_snake_case []
+        attributes:
+          !!python/object/apply:ghga_transpiler.transformations.to_attributes []
     sheet_name: ExperimentMethod
   - settings:
       end_column: 7
@@ -128,6 +134,8 @@ worksheets:
       transformations:
         experiments:
           !!python/object/apply:ghga_transpiler.transformations.to_list []
+        format:
+          !!python/object/apply:ghga_transpiler.transformations.to_snake_case []
     sheet_name: ResearchDataFile
   - settings:
       end_column: 7