template update

.devcontainer/Dockerfile

@@ -8,7 +8,7 @@ ARG USER_GID=$USER_UID
 RUN if [ "$USER_GID" != "1000" ] || [ "$USER_UID" != "1000" ]; then groupmod --gid $USER_GID vscode && usermod --uid $USER_UID --gid $USER_GID vscode; fi
 
 # [Option] Install Node.js
-ARG INSTALL_NODE="true"
+ARG INSTALL_NODE="false"
 ARG NODE_VERSION="lts/*"
 RUN if [ "${INSTALL_NODE}" = "true" ]; then su vscode -c "umask 0002 && . /usr/local/share/nvm/nvm.sh && nvm install ${NODE_VERSION} 2>&1"; fi
 

.template/mandatory_files.txt

@@ -23,6 +23,7 @@ lock/requirements-dev.txt
 lock/requirements.txt
 
 Dockerfile
+Dockerfile.debian
 config_schema.json
 example_config.yaml
 LICENSE

Dockerfile.debian

@@ -0,0 +1,48 @@
+# Copyright 2021 - 2024 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# for the German Human Genome-Phenome Archive (GHGA)
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+## creating building container
+FROM python:3.12-slim-bookworm AS builder
+# update and install dependencies
+RUN apt update
+RUN apt upgrade -y
+RUN pip install build
+# copy code
+COPY . /service
+WORKDIR /service
+# build wheel
+RUN python -m build
+
+# creating running container
+FROM python:3.12-slim-bookworm
+# update and install dependencies
+RUN apt update
+RUN apt upgrade -y
+# copy and install requirements and wheel
+WORKDIR /service
+COPY --from=builder /service/lock/requirements.txt /service
+RUN pip install --no-deps -r requirements.txt
+RUN rm requirements.txt
+COPY --from=builder /service/dist/ /service
+RUN pip install --no-deps *.whl
+RUN rm *.whl
+# create new user and execute as that user
+RUN useradd --create-home appuser
+WORKDIR /home/appuser
+USER appuser
+# set environment
+ENV PYTHONUNBUFFERED=1
+# Please adapt to package name:
+ENTRYPOINT ["my-microservice"]

lock/requirements-dev-template.in

@@ -1,7 +1,7 @@
 # common requirements for development and testing of services
 
 pytest>=8.2
-pytest-asyncio>=0.23.6
+pytest-asyncio>=0.23.7
 pytest-cov>=5
 snakeviz>=2.2
 logot>=1.3
@@ -29,4 +29,4 @@ setuptools>=69.5
 # required since switch to pyproject.toml and pip-tools
 tomli_w>=1.0
 
-uv>=0.1.44
+uv>=0.2.13