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Screen Setup

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Robert J. Gifford edited this page Jun 24, 2024 · 1 revision

Input Data Components

  1. Target Database (TDb): A collection of whole genome sequence or transcriptome assemblies serving as the target for similarity searches.
  2. Query Sequences (Probes): Input sequences for similarity searches of the Target Database.
  3. Reference Sequence Library (RSL): Represents the genetic diversity associated with the genome feature(s) under investigation.

The Database Integrated Genome Screening (DIGS) Tool Wiki

Maintained by: R.J. Gifford.

DIGS Tool

  1. Home
  2. Background
  3. Requirements
  4. Installation
  5. Getting Started

Overview

  1. DIGS Concept
  2. Investigation Structure
  3. Exploration Phase
  4. Analysis Phase

Input Components

  1. Target Database (tDB)
  2. Reference Sequence Library (RSL)
  3. Query Sequences (Probes)
  4. Control File

Process

  1. Running a Screen
  2. Project Database
  3. Database Querying
  4. Extending the Project DB Schema
  5. Reclassifying Results
  6. Merging Contiguous Hits

Reference

  1. Example SQL
  2. Archive & Restore Project DBs

Further Information

  1. FAQ
  2. NCBI taxonomy DB
  3. Installation-Guide-for-OS-X

Source Code

  1. Development Approach
  2. Code Summary
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