samtools

This is the official development repository for samtools.

The original samtools package has been split into three separate but tightly coordinated projects:

Name		Name	Last commit message	Last commit date
Latest commit History 1,362 Commits
examples		examples
misc		misc
test		test
win32		win32
.gitattributes		.gitattributes
.gitignore		.gitignore
.travis.yml		.travis.yml
AUTHORS		AUTHORS
ChangeLog.old		ChangeLog.old
INSTALL		INSTALL
LICENSE		LICENSE
Makefile		Makefile
Makefile.mingw		Makefile.mingw
NEWS		NEWS
README		README
README.md		README.md
bam.c		bam.c
bam.h		bam.h
bam2bcf.c		bam2bcf.c
bam2bcf.h		bam2bcf.h
bam2bcf_indel.c		bam2bcf_indel.c
bam2depth.c		bam2depth.c
bam_aux.c		bam_aux.c
bam_cat.c		bam_cat.c
bam_color.c		bam_color.c
bam_endian.h		bam_endian.h
bam_flags.c		bam_flags.c
bam_import.c		bam_import.c
bam_index.c		bam_index.c
bam_lpileup.c		bam_lpileup.c
bam_lpileup.h		bam_lpileup.h
bam_mate.c		bam_mate.c
bam_md.c		bam_md.c
bam_plbuf.c		bam_plbuf.c
bam_plbuf.h		bam_plbuf.h
bam_plcmd.c		bam_plcmd.c
bam_reheader.c		bam_reheader.c
bam_rmdup.c		bam_rmdup.c
bam_rmdupse.c		bam_rmdupse.c
bam_sort.c		bam_sort.c
bam_split.c		bam_split.c
bam_stat.c		bam_stat.c
bam_tview.c		bam_tview.c
bam_tview.h		bam_tview.h
bam_tview_curses.c		bam_tview_curses.c
bam_tview_html.c		bam_tview_html.c
bamshuf.c		bamshuf.c
bamtk.c		bamtk.c
bedcov.c		bedcov.c
bedidx.c		bedidx.c
cut_target.c		cut_target.c
errmod.c		errmod.c
errmod.h		errmod.h
faidx.c		faidx.c
kaln.c		kaln.c
kaln.h		kaln.h
kprobaln.c		kprobaln.c
kprobaln.h		kprobaln.h
padding.c		padding.c
phase.c		phase.c
sam.c		sam.c
sam.h		sam.h
sam_header.c		sam_header.c
sam_header.h		sam_header.h
sam_view.c		sam_view.c
sample.c		sample.c
sample.h		sample.h
samtools.1		samtools.1
samtools.h		samtools.h
stats.c		stats.c
stats_isize.c		stats_isize.c
stats_isize.h		stats_isize.h

Provide feedback