v3.3.0

gor v3.3.0 contains the following features:

Language changes:

• Nested split needs to be one based
• Handle togor in nor nested query

Bug fixes:

• Fix to GTTRANSPOSE
• pgor -split double-counts on the edges
• varjoin -n with nested query fails but works with materialized result (contains vargroup)
• vargroup fails on empty input
• Renable table bucket clean up

v3.2.0

gor v3.2.0 contains change to make scala-parser-combinators as a transitive dependency.

v3.1.0

gor v3.1.0 contains the following features:

Spark integration:

• Add details on using Spark within GOR
• Make GORshell extendable
• Updates to readme including adding Phecode data

Fix module dependencies and library usage

Bug fixes:

• Wrong chrom numbers in binarywrite pvar file
• Add support for ordered NOR files in MERGE
• Iterator closed error even after iterator re-init

v3.0.0

gor v3.0.0 contains the following features:

• Spark integration - set GOR config and GOR alias in GOR Spark session
• Build GOR with Java 11
• Add ordered option to MAP/MULTIMAP
• Fix documentation and add prgc options for PRGTGEN
• Documentation for ordered option for GROUP, GRANNO, ATMIN/ATMAX, MAP, MULTIMAP, INSET
• Documentation for daydiff and yeardiff functions

Bug fixes:

• nor x.nord does not validate that column names match like gor x.gord does
• Fix nested nor merge gor context
• vargroup cant handle zero row input like when calling getheader in nested queries

v2.12.0

gor v2.12.0 contains the following features:

• Add -ordered option to GROUP, ATMIN/MAX and GRANNO
• Read source column from dictionary if not specified
• Add flag supportsbuckets in table service.

v2.11.0

gor v2.11.0 contains the following features:

• Add is symoblic column to nor -r results
• Support pushdown for external commands
• Add new CALC functions for calculating diffs between dates
• Allow '.' in column names in GOR

Bug fixes:

• Security vulnerability in com.google.oauth-client
• Security vulnerability in commons-beanutils
• Undo Intellij refactoring suggestions
• CSVCC and CSVSEL don't work in a NOR context

v2.10.0

gor v2.10.0 contains the following features:

• NOR returns relative instead of absolute paths and includes a new column called "isSymbolic"
• Refactoring of model and gor tools

Bug fixes:

• CALC functions should not evaluate argument expressions more than once
• TableService failing tread locks

v2.9.0

gor v2.9.0 contains the following features:

Readme:

• Added reference data details
• Added download details

Language changes:

• Support gz compression for nor like files
• Simplify handling of tag-bucket relations
• Handle bgen on s3
• Support SQL hints on GOR scripts

Improvements:

• Refactor GorSecurityContext
• SourceRef cleanup
• Improvements to Range Merge Iterator
• Improvements to filter handling in Genomic Iterator

Bug fixes:

• VARJOIN ignores case in alleles from left file but not from right
• GTLD optimization
• GOR vcf.gz write needs improvement
• Table clean up cleans too much
• Fix plinkregression with pgor
• BoundedIterator is created twice
• Fix parquet write
• Bug in CALCTYPE

v2.8.1

gor v2.8.1 contains a fix to plink regression while using using pgor.

v2.8.0

gor v2.8.0 contains the following features:

Language changes:

• New command called GTTRANSPOSE
• Refinements to GTGEN
• Add a way to clear script in GORshell

Spark integration:

• Fix Spark serialization
• Fix Parquet NORRemove transient
• ParseArith from GorRowMapFunction

Bug fixes:

• Failing tests when using Antlr Calc parser
• IOException: Too many open files
• Throw resource exception when trying to write to invalid path
• Write should do verifyorder on gor and gorz to guarantee gor order