v3.0.0 release

• Significant improvements in assembly accuracy for both short and long RNAseq reads
• StringTie can now better recognize and assemble incompletely processed (nascent) transcripts which are abundant in Total RNA libraries (e.g. Ribo-Zero data)
• Addressed -e quantification issues where some transcripts with low coverage were no longer reported in the output (fixing #238, #357)

v2.2.3

Full Changelog: v2.2.2...v2.2.3

v2.2.2 patchfix release

• fix #348 : adds mutex to manage concurrent writing to covered referen… by @gsatas in #371
• fix #320 : fixes a out-of-bounds issue when a large number of predictions are generated
• fixes for other rare situations causing a program crash

Full Changelog: v2.2.1...v2.2.2

v2.2.1

• addressed an issue causing the -e option to not output low coverage transcripts
• fixed a --ptf data loading problem

v2.2.0

release 2.2.0

v2.1.7

• fix an occasional bug (crash) when --mix option was used

v2.1.6

• new --mix option added to use both short and long read alignments; when this option is used, the 2nd .bam file in the command line is expected to be a long reads alignment file (the 1st being the short-reads alignment file); -L option should not be used in this case.

v2.1.4

release 2.1.4

v2.1.3b fix

quick fix for a --merge regression bug in v2.1.3

v2.1.3 release

release 2.1.3