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Greene Laboratory

Greene Laboratory at the University of Colorado Anschutz

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  1. scihub scihub Public

    Source code and data analyses for the Sci-Hub Coverage Study

    Jupyter Notebook 296 38

  2. BioBombe BioBombe Public

    BioBombe: Sequentially compressed gene expression features enhances biological signatures

    Jupyter Notebook 64 25

  3. lab-website-template lab-website-template Public template

    An easy-to-use, flexible website template for labs.

    HTML 370 317

  4. covid19-review covid19-review Public

    A collaborative review of the emerging COVID-19 literature. Join the chat here:

    TeX 116 81

  5. deep-review deep-review Public

    A collaboratively written review paper on deep learning, genomics, and precision medicine

    HTML 1.3k 271

  6. tybalt tybalt Public

    Training and evaluating a variational autoencoder for pan-cancer gene expression data

    HTML 165 62

Repositories

Showing 10 of 169 repositories
  • scrumlord Public

    Continuous administration of the Greene Lab's electronic scrum

    greenelab/scrumlord’s past year of commit activity
    Python 13 BSD-3-Clause 8 2 0 Updated Dec 19, 2024
  • hclust Public

    Agglomerative hierarchical clustering in JavaScript

    greenelab/hclust’s past year of commit activity
    JavaScript 18 MIT 3 0 0 Updated Dec 17, 2024
  • pred_missing_celltypes Public

    Predicting missing cell-type proportions from deconvolution residual using NNLS.

    greenelab/pred_missing_celltypes’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 1 0 0 Updated Dec 17, 2024
  • lab-website-template Public template

    An easy-to-use, flexible website template for labs.

    greenelab/lab-website-template’s past year of commit activity
    HTML 370 BSD-3-Clause 317 7 0 Updated Dec 16, 2024
  • lab-website-template-docs Public

    GitBook documentation for Lab Website Template

    greenelab/lab-website-template-docs’s past year of commit activity
    1 1 2 1 Updated Dec 16, 2024
  • buddi Public

    BuDDI model implementation

    greenelab/buddi’s past year of commit activity
    Python 2 BSD-3-Clause 3 0 0 Updated Dec 5, 2024
  • onboarding Public

    Onboarding materials for the Greene Lab

    greenelab/onboarding’s past year of commit activity
    31 CC0-1.0 22 1 0 Updated Nov 22, 2024
  • generalization-manuscript Public
    greenelab/generalization-manuscript’s past year of commit activity
    HTML 0 CC-BY-4.0 1 0 0 Updated Nov 11, 2024
  • CNN_deconvolution Public

    Ongoing project on deconvolution using higher-dimensional image representations of gene expression data.

    greenelab/CNN_deconvolution’s past year of commit activity
    0 BSD-3-Clause 1 0 0 Updated Oct 30, 2024
  • buddi_analysis Public

    Analysis notebooks for the BuDDI manuscript

    greenelab/buddi_analysis’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 2 9 0 Updated Oct 25, 2024
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