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@griffithlab

The Griffith Lab

Academic Lab of Obi and Malachi Griffith

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  1. regtools regtools Public

    Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

    C++ 115 25

  2. GenVisR GenVisR Public

    Genome data visualizations

    R 203 62

  3. pVACtools pVACtools Public

    Python 131 58

  4. VAtools VAtools Public

    A set of tools to annotate VCF files with expression and readcount data

    Python 25 11

  5. rnabio.org rnabio.org Public

    website for the rnaseq course

    SCSS 87 36

  6. civic-v2 civic-v2 Public

    CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

    TypeScript 19 5

Repositories

Showing 10 of 72 repositories
  • civic-v2 Public

    CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

    griffithlab/civic-v2’s past year of commit activity
    TypeScript 19 MIT 5 72 7 Updated Aug 3, 2024
  • rnabio.org Public

    website for the rnaseq course

    griffithlab/rnabio.org’s past year of commit activity
    SCSS 87 MIT 36 19 2 Updated Aug 1, 2024
  • pVACtools Public
    griffithlab/pVACtools’s past year of commit activity
    Python 131 BSD-3-Clause-Clear 58 83 12 Updated Jul 26, 2024
  • civic-docs Public

    Source code for the civicdb.org docs

    griffithlab/civic-docs’s past year of commit activity
    4 8 19 1 Updated Jul 19, 2024
  • usp7_scripts Public

    Analysis collaboration with Albert Kim lab - impact of USP7 knockout on splicing

    griffithlab/usp7_scripts’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jul 16, 2024
  • neoag_vaccine_scripts Public
    griffithlab/neoag_vaccine_scripts’s past year of commit activity
    Python 0 0 8 0 Updated Jul 8, 2024
  • griffithlab.org Public

    Griffith lab research website

    griffithlab/griffithlab.org’s past year of commit activity
    JavaScript 15 MIT 30 1 0 Updated Jul 5, 2024
  • VAtools Public

    A set of tools to annotate VCF files with expression and readcount data

    griffithlab/VAtools’s past year of commit activity
    Python 25 MIT 11 5 0 Updated Jul 1, 2024
  • CIVIC_SVI_Course Public

    A hands on course explaining how to complete somatic cancer variant interpretation using CIViC and current guidelines

    griffithlab/CIVIC_SVI_Course’s past year of commit activity
    CSS 0 CC-BY-4.0 2 0 1 Updated Jun 7, 2024
  • pVACtools_Intro_Course Public

    Getting started with pVACtools - pVACseq, pVACbind and pVACview

    griffithlab/pVACtools_Intro_Course’s past year of commit activity
    CSS 0 CC-BY-4.0 2 0 1 Updated Jun 7, 2024
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