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Reproducible science in R

Zachary S.L. Foster, Zhian N. Kamvar, and Niklaus J. Grünwald

Welcome! This primer provides a concise introduction to conducting reproducible science in R. While this primer does not require extensive knowledge of programming in R, the user is expected to install R and all packages required for this primer.

Chapters

Session Length Clock
Introduction (Nik) 20min 8:30
Data formatting and read/write (Zhian) 15min 8:50
Markdown (Zach) 30min 9:20
Break 20min 9:40
Intro to R (Zhian) 10min 10:00
R markdown (Zach) 50min 10:10
Git and github (Zhian) 20min 11:00
Organizing Reproducible Research (Zach) 10min 11:20
Wrapup Survey 5min 11:30

Website

You can find rendered vignettes on our website.

Building the webite

install the git2r, knitcitations, and rmarkdown packages:

devtools::install_github("rstudio/rmarkdown", "cboettig/knitcitations")
install.packages("git2r")

To build the website locally:

rmarkdown::render_site()

To build the website on the gh-pages branch

source("make_gh_page.R", echo = TRUE)

You can then push your changes from the master and the gh-pages branch.

It seems to work, but ¯\(ツ)

Survey

http://goo.gl/forms/OCFxqPbXhsWMBQYT2

About

This site provides information on conducting reproducible science using the R language.

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