StatEasyPlot

use geoms form ggplot2 to make some plots

Overview

StatEasyPlot uses ggplot2 ggrepel and ggsci to make plots:

• line_plot()
• lines_plot()
• histogram_plot()
• oneline_histogram_plot()
• sv_count()

Installation

The latest development version may have new features, and you can get it from GitHub:

# Use the devtools package
# install.packages("devtools")
devtools::install_github("guoxueyu/StatEasyPlot/StatEasyPlot")

Usage

See the [Examples] part to learn more about how to use ggrepel in your project.

Examples

How to use line_plot() function

The input file of this function has no header and contains two columns, as shown below

Column one(string)	Column two(numeric)
samplename1	10
samplename2	20
...	...

line_plot <- function(data,ylab_str,ymin,ymax){}

p <- line_plot("path/to/your/input","the ylab title",0,25)

How to use lines_plot() function

The input file of this function has no header and contains three columns, as shown below

Column one(string)	Column two(numeric)	Column three(string)
samplename1	10	type1
samplename2	20	type2
...	...	...

lines_plot <- function(data,ylab_str,order_type){}

p <- lines_plot("path/to/your/input","the ylab title","type name used for ordering")

How to use histogram_plot() function

The input file of this function has no header and contains two columns, as shown below

Column one(string)	Column two(numeric)
samplename1	10
samplename2	20
...	...

histogram_plot <-function(data,ylab_str,his_width){}

p <- histogram_plot("path/to/your/input","the ylab title",0.2)

How to use oneline_histogram_plot() function

The input file of this function has no header and contains three columns, as shown below

Column one(string)	Column two(numeric)	Column three(string)
samplename1	10	type1
samplename2	20	type2
...	...	...

oneline_histogram_plot <- function(data,ylab_str,line_type,histogram_type,order_type,ymin,ymax){}

p <- oneline_histogram_plot("path/to/your/input","the ylab title","the type name for geom_line()","the type name for geom_histogram()","the type name for ordering",ymin,ymax)

How to use sv_count() function

Column one(string)	Column two(numeric)	Column three(string)
sample1	7942	DEL
sample1	1511	DUP
sample1	8862	INS
sample1	652	INV
sample1	164	TRA
sample1	237	OTHER
sample2	18368	SUM
sample2	7242	DEL
sample2	1111	DUP
sample2	8162	INS
sample2	612	INV
sample2	114	TRA
sample2	217	OTHER
sample2	11368	SUM

sv_count <- function(data,ylab_str){}

p <- sv_count("path/to/your/input","sv number")