Merge pull request #303 from gyorilab/epi-sc6-pt2

Add Hunt model for Scenario 6
gyorilab · Feb 29, 2024 · 1df6903 · 1df6903
2 parents ed1c63b + 2c2ec68
commit 1df6903
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diff --git a/mira/modeling/ode.py b/mira/modeling/ode.py
@@ -34,7 +34,8 @@ def __init__(self, model: Model, initialized: bool):
  self.parameter_values = []
  self.variable_values = []
  for parameter_object in model.parameters.values():
- self.parameter_values.append(parameter_object.value)
+ if not parameter_object.placeholder:
+ self.parameter_values.append(parameter_object.value)
  for variable_object in model.variables.values():
  self.variable_values.append(variable_object.data['expression'])
 

diff --git a/notebooks/hackathon_2024.02/scenario6/scenario6.ipynb b/notebooks/hackathon_2024.02/scenario6/scenario6.ipynb