Merge pull request #199 from indralab/fix_askenet_processing

Fix processing and assembling parameter values to/from Petri nets
gyorilab · Jul 11, 2023 · 375da30 · 375da30
2 parents a499579 + 3c5c9a3
commit 375da30
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diff --git a/mira/modeling/askenet/petrinet.py b/mira/modeling/askenet/petrinet.py
@@ -169,7 +169,7 @@ def __init__(self, model: Model):
  if param.placeholder:
  continue
  param_dict = {'id': str(key)}
- if param.value:
+ if param.value is not None:
  param_dict['value'] = param.value
  if not param.distribution:
  pass

diff --git a/mira/sources/askenet/petrinet.py b/mira/sources/askenet/petrinet.py
@@ -105,6 +105,7 @@ def template_model_from_askenet_json(model_json) -> TemplateModel:
 
  param_values = {
  p['id']: p['value'] for p in ode_semantics.get('parameters', [])
+ if p.get('value') is not None
  }
 
  # Next we process initial conditions