Merge pull request #349 from gyorilab/transition_naming

Change new transition naming upon stratification
gyorilab · Aug 7, 2024 · 9097182 · 9097182
2 parents 264a34e + 7be5711
commit 9097182
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/mira/metamodel/ops.py b/mira/metamodel/ops.py
@@ -322,15 +322,15 @@ def stratify(
  **{key: target_stratum})
  # todo will need to generalize for different kwargs for different conversions
  template = conversion_cls(subject=subject, outcome=outcome,
- name=f't{idx}_{source_stratum_name}_{target_stratum_name}')
+ name=f't_conv_{idx}_{source_stratum_name}_{target_stratum_name}')
  template.set_mass_action_rate_law(param_name)
  templates.append(template)
  if not directed:
  param_name = f"p_{target_stratum_name}_{source_stratum_name}"
  if param_name not in parameters:
  parameters[param_name] = Parameter(name=param_name, value=0.1)
  reverse_template = conversion_cls(subject=outcome, outcome=subject,
- name=f't{idx}_{target_stratum_name}_{source_stratum_name}')
+ name=f't_conv_{idx}_{target_stratum_name}_{source_stratum_name}')
  reverse_template.set_mass_action_rate_law(param_name)
  templates.append(reverse_template)