Update to v0.1.7

hackingmaterials · Dec 15, 2017 · 5ef1e89 · 5ef1e89
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diff --git a/docs/_sources/changelog.rst.txt b/docs/_sources/changelog.rst.txt
@@ -5,6 +5,18 @@
 matminer Changelog
 ==================
 
+**v0.1.7**
+
+* lots of code cleanup / refactoring / review, including trimming of unused / moved packages (A. Jain)
+* new Chemenv structure fingerprint (N. Zimmermann)
+* various updates to BSFeaturizer (A. Faghaninia)
+* cleanup / rework of DOSFeaturizer (A. Faghaninia)
+* Updated citation for OFM paper (L. Ward)
+* CNSiteFingerprint goes to CN=16 by default, includes two presets ("cn" and "ops") (A. Jain)
+* stats use double colon instead of double underscore for params (A. Jain)
+* Various cleanups to Miedema featurizer (Q. Wang, A. Faghaninia, A. Dunn)
+
+
 **v0.1.6**
 
 * new CrystalSiteFingerprint and CNSiteFingerprint (A. Jain)

diff --git a/docs/_sources/contributors.rst.txt b/docs/_sources/contributors.rst.txt
@@ -26,8 +26,8 @@ Matminer is led by `Anubhav Jain <http://www.anubhavjain.net/>`_ and the Hacking
 University of Chicago
 ----------------------
 
-* Jiming Chen
 * Logan Ward
+* Jiming Chen
 * Ashwin Aggarwal
 
 

diff --git a/docs/_sources/matminer.distance_metrics.rst.txt b/docs/_sources/matminer.distance_metrics.rst.txt
@@ -0,0 +1,30 @@
+matminer\.distance\_metrics package
+===================================
+
+Submodules
+----------
+
+matminer\.distance\_metrics\.site module
+----------------------------------------
+
+.. automodule:: matminer.distance_metrics.site
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+matminer\.distance\_metrics\.structure module
+---------------------------------------------
+
+.. automodule:: matminer.distance_metrics.structure
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: matminer.distance_metrics
+    :members:
+    :undoc-members:
+    :show-inheritance:
diff --git a/docs/_sources/matminer.featurizers.rst.txt b/docs/_sources/matminer.featurizers.rst.txt
@@ -1,13 +1,6 @@
 matminer\.featurizers package
 =============================
 
-Subpackages
------------
-
-.. toctree::
-
-    matminer.featurizers.data_files
-
 Submodules
 ----------
 
@@ -35,14 +28,6 @@ matminer\.featurizers\.composition module
     :undoc-members:
     :show-inheritance:
 
-matminer\.featurizers\.data module
-----------------------------------
-
-.. automodule:: matminer.featurizers.data
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
 matminer\.featurizers\.site module
 ----------------------------------
 

diff --git a/docs/_sources/matminer.rst.txt b/docs/_sources/matminer.rst.txt
@@ -8,23 +8,14 @@ Subpackages
 
     matminer.data_retrieval
     matminer.datasets
+    matminer.distance_metrics
     matminer.featurizers
     matminer.figrecipes
-    matminer.learners
-    matminer.models
-    matminer.reference_data
+    matminer.utils
 
 Submodules
 ----------
 
-matminer\.decorate module
--------------------------
-
-.. automodule:: matminer.decorate
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
 matminer\.pyCookieCheat module
 ------------------------------
 
@@ -33,14 +24,6 @@ matminer\.pyCookieCheat module
     :undoc-members:
     :show-inheritance:
 
-matminer\.utils module
-----------------------
-
-.. automodule:: matminer.utils
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
 
 Module contents
 ---------------

diff --git a/docs/_sources/matminer.utils.data_files.rst.txt b/docs/_sources/matminer.utils.data_files.rst.txt
@@ -0,0 +1,22 @@
+matminer\.utils\.data\_files package
+====================================
+
+Submodules
+----------
+
+matminer\.utils\.data\_files\.deml\_elementdata module
+------------------------------------------------------
+
+.. automodule:: matminer.utils.data_files.deml_elementdata
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: matminer.utils.data_files
+    :members:
+    :undoc-members:
+    :show-inheritance:
diff --git a/docs/_sources/matminer.utils.rst.txt b/docs/_sources/matminer.utils.rst.txt
@@ -0,0 +1,45 @@
+matminer\.utils package
+=======================
+
+Subpackages
+-----------
+
+.. toctree::
+
+    matminer.utils.data_files
+
+Submodules
+----------
+
+matminer\.utils\.data module
+----------------------------
+
+.. automodule:: matminer.utils.data
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+matminer\.utils\.flattendict module
+-----------------------------------
+
+.. automodule:: matminer.utils.flattendict
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+matminer\.utils\.kernels module
+-------------------------------
+
+.. automodule:: matminer.utils.kernels
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: matminer.utils
+    :members:
+    :undoc-members:
+    :show-inheritance:
diff --git a/docs/changelog.html b/docs/changelog.html
@@ -5,13 +5,13 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>MatMiner Changlog &#8212; matminer 0.1.6 documentation</title>
+    <title>MatMiner Changlog &#8212; matminer 0.1.7 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript">
       var DOCUMENTATION_OPTIONS = {
         URL_ROOT:    './',
-        VERSION:     '0.1.6',
+        VERSION:     '0.1.7',
         COLLAPSE_INDEX: false,
         FILE_SUFFIX: '.html',
         HAS_SOURCE:  true,
@@ -34,7 +34,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.1.6 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.1.7 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -45,6 +45,17 @@ <h3>Navigation</h3>
 
   <div class="section" id="matminer-changelog">
 <h1>matminer Changelog<a class="headerlink" href="#matminer-changelog" title="Permalink to this headline">¶</a></h1>
+<p><strong>v0.1.7</strong></p>
+<ul class="simple">
+<li>lots of code cleanup / refactoring / review, including trimming of unused / moved packages (A. Jain)</li>
+<li>new Chemenv structure fingerprint (N. Zimmermann)</li>
+<li>various updates to BSFeaturizer (A. Faghaninia)</li>
+<li>cleanup / rework of DOSFeaturizer (A. Faghaninia)</li>
+<li>Updated citation for OFM paper (L. Ward)</li>
+<li>CNSiteFingerprint goes to CN=16 by default, includes two presets (“cn” and “ops”) (A. Jain)</li>
+<li>stats use double colon instead of double underscore for params (A. Jain)</li>
+<li>Various cleanups to Miedema featurizer (Q. Wang, A. Faghaninia, A. Dunn)</li>
+</ul>
 <p><strong>v0.1.6</strong></p>
 <ul class="simple">
 <li>new CrystalSiteFingerprint and CNSiteFingerprint (A. Jain)</li>
@@ -153,7 +164,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.1.6 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.1.7 documentation</a> &#187;</li> 
       </ul>
     </div>
     <div class="footer" role="contentinfo">

diff --git a/docs/contributors.html b/docs/contributors.html
@@ -5,13 +5,13 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>MatMiner Contributors &#8212; matminer 0.1.6 documentation</title>
+    <title>MatMiner Contributors &#8212; matminer 0.1.7 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript">
       var DOCUMENTATION_OPTIONS = {
         URL_ROOT:    './',
-        VERSION:     '0.1.6',
+        VERSION:     '0.1.7',
         COLLAPSE_INDEX: false,
         FILE_SUFFIX: '.html',
         HAS_SOURCE:  true,
@@ -34,7 +34,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.1.6 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.1.7 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -62,8 +62,8 @@ <h2><a class="reference external" href="https://hackingmaterials.lbl.gov/">LBNL
 <div class="section" id="university-of-chicago">
 <h2>University of Chicago<a class="headerlink" href="#university-of-chicago" title="Permalink to this headline">¶</a></h2>
 <ul class="simple">
-<li>Jiming Chen</li>
 <li>Logan Ward</li>
+<li>Jiming Chen</li>
 <li>Ashwin Aggarwal</li>
 </ul>
 </div>
@@ -134,7 +134,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.1.6 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.1.7 documentation</a> &#187;</li> 
       </ul>
     </div>
     <div class="footer" role="contentinfo">

diff --git a/docs/example_bulkmod.html b/docs/example_bulkmod.html
@@ -5,13 +5,13 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>Predicting bulk moduli with matminer &#8212; matminer 0.1.6 documentation</title>
+    <title>Predicting bulk moduli with matminer &#8212; matminer 0.1.7 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript">
       var DOCUMENTATION_OPTIONS = {
         URL_ROOT:    './',
-        VERSION:     '0.1.6',
+        VERSION:     '0.1.7',
         COLLAPSE_INDEX: false,
         FILE_SUFFIX: '.html',
         HAS_SOURCE:  true,
@@ -34,7 +34,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.1.6 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.1.7 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -365,7 +365,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.1.6 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.1.7 documentation</a> &#187;</li> 
       </ul>
     </div>
     <div class="footer" role="contentinfo">