Update to v0.4.3

hackingmaterials · Oct 12, 2018 · e595a99 · e595a99
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diff --git a/docs/_sources/changelog.rst.txt b/docs/_sources/changelog.rst.txt
@@ -5,6 +5,16 @@
 matminer Changelog
 ==================
 
+**v0.4.3**
+
+* Revamped test / example data loader classes (D. Dopp, A. Ganose, A. Dunn)
+* Add chunksize support to improve performance of dataframe featurization (A. Ganose)
+* Improve performance of BandCenter with large coefficients (A. Faghaninia)
+* Revamp of MultiFeaturizer (A. Ganose)
+* Custom progress bar for running in notebook (A. Ganose)
+* Improved multi-index for conversion featurizerse (A. Ganose)
+* Minor fixes / improvements (D. Dopp, A. Ganose, A. Faghaninia)
+
 **v0.4.2**
 
 * Refactor conversion utils to be featurizers for consistency and parallelism (A. Ganose)

diff --git a/docs/_sources/contributors.rst.txt b/docs/_sources/contributors.rst.txt
@@ -23,6 +23,7 @@ Matminer is led by `Anubhav Jain <http://www.anubhavjain.net/>`_ and the Hacking
 * Jason Frost
 * Julien Brenneck
 * Alex Ganose
+* Daniel Dopp
 
 University of Chicago
 ----------------------

diff --git a/docs/_sources/featurizer_summary.rst.txt b/docs/_sources/featurizer_summary.rst.txt
@@ -34,7 +34,7 @@ Parent classes and meta-featurizers.
 ==========================   ================================================================================================================================================================================================================================================================================================================================================================================================================
 Name                         Description
 ==========================   ================================================================================================================================================================================================================================================================================================================================================================================================================
-:code:`MultipleFeaturizer`   Class that runs multiple featurizers on the same data `[more] <https://hackingmaterials.github.io/matminer/matminer.featurizers.html#matminer.featurizers.base.MultipleFeaturizer>`_
+:code:`MultipleFeaturizer`    `[more] <https://hackingmaterials.github.io/matminer/matminer.featurizers.html#matminer.featurizers.base.MultipleFeaturizer>`_
 :code:`StackedFeaturizer`     `[more] <https://hackingmaterials.github.io/matminer/matminer.featurizers.html#matminer.featurizers.base.StackedFeaturizer>`_
 :code:`BaseFeaturizer`       Abstract class to calculate features from raw materials input data `[more] <https://hackingmaterials.github.io/matminer/matminer.featurizers.html#matminer.featurizers.base.BaseFeaturizer>`_
 ==========================   ================================================================================================================================================================================================================================================================================================================================================================================================================

diff --git a/docs/_sources/matminer.datasets.rst.txt b/docs/_sources/matminer.datasets.rst.txt
@@ -6,15 +6,23 @@ Subpackages
 
 .. toctree::
 
-    matminer.datasets.test_datasets
+    matminer.datasets.tests
 
 Submodules
 ----------
 
-matminer.datasets.dataframe\_loader module
-------------------------------------------
+matminer.datasets.dataset\_retrieval module
+-------------------------------------------
 
-.. automodule:: matminer.datasets.dataframe_loader
+.. automodule:: matminer.datasets.dataset_retrieval
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+matminer.datasets.utils module
+------------------------------
+
+.. automodule:: matminer.datasets.utils
     :members:
     :undoc-members:
     :show-inheritance:

diff --git a/docs/_sources/matminer.datasets.tests.rst.txt b/docs/_sources/matminer.datasets.tests.rst.txt
@@ -0,0 +1,46 @@
+matminer.datasets.tests package
+===============================
+
+Submodules
+----------
+
+matminer.datasets.tests.base module
+-----------------------------------
+
+.. automodule:: matminer.datasets.tests.base
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+matminer.datasets.tests.test\_dataset\_retrieval module
+-------------------------------------------------------
+
+.. automodule:: matminer.datasets.tests.test_dataset_retrieval
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+matminer.datasets.tests.test\_datasets module
+---------------------------------------------
+
+.. automodule:: matminer.datasets.tests.test_datasets
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+matminer.datasets.tests.test\_utils module
+------------------------------------------
+
+.. automodule:: matminer.datasets.tests.test_utils
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: matminer.datasets.tests
+    :members:
+    :undoc-members:
+    :show-inheritance:
diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: '',
-    VERSION: '0.4.2',
+    VERSION: '0.4.3',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     FILE_SUFFIX: '.html',

diff --git a/docs/changelog.html b/docs/changelog.html
@@ -6,7 +6,7 @@
   <head>
     <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>MatMiner Changlog &#8212; matminer 0.4.2 documentation</title>
+    <title>MatMiner Changlog &#8212; matminer 0.4.3 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" src="_static/documentation_options.js"></script>
@@ -28,7 +28,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.2 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.3 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -39,6 +39,16 @@ <h3>Navigation</h3>
 
   <div class="section" id="matminer-changelog">
 <h1>matminer Changelog<a class="headerlink" href="#matminer-changelog" title="Permalink to this headline">¶</a></h1>
+<p><strong>v0.4.3</strong></p>
+<ul class="simple">
+<li>Revamped test / example data loader classes (D. Dopp, A. Ganose, A. Dunn)</li>
+<li>Add chunksize support to improve performance of dataframe featurization (A. Ganose)</li>
+<li>Improve performance of BandCenter with large coefficients (A. Faghaninia)</li>
+<li>Revamp of MultiFeaturizer (A. Ganose)</li>
+<li>Custom progress bar for running in notebook (A. Ganose)</li>
+<li>Improved multi-index for conversion featurizerse (A. Ganose)</li>
+<li>Minor fixes / improvements (D. Dopp, A. Ganose, A. Faghaninia)</li>
+</ul>
 <p><strong>v0.4.2</strong></p>
 <ul class="simple">
 <li>Refactor conversion utils to be featurizers for consistency and parallelism (A. Ganose)</li>
@@ -356,7 +366,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.2 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.3 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/contributors.html b/docs/contributors.html
@@ -6,7 +6,7 @@
   <head>
     <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>MatMiner Contributors &#8212; matminer 0.4.2 documentation</title>
+    <title>MatMiner Contributors &#8212; matminer 0.4.3 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" src="_static/documentation_options.js"></script>
@@ -28,7 +28,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.2 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.3 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -53,6 +53,7 @@ <h2><a class="reference external" href="https://hackingmaterials.lbl.gov/">LBNL
 <li>Jason Frost</li>
 <li>Julien Brenneck</li>
 <li>Alex Ganose</li>
+<li>Daniel Dopp</li>
 </ul>
 </div>
 <div class="section" id="university-of-chicago">
@@ -136,7 +137,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.2 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.3 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/example_bulkmod.html b/docs/example_bulkmod.html
@@ -6,7 +6,7 @@
   <head>
     <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>Predicting bulk moduli with matminer &#8212; matminer 0.4.2 documentation</title>
+    <title>Predicting bulk moduli with matminer &#8212; matminer 0.4.3 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" src="_static/documentation_options.js"></script>
@@ -28,7 +28,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.2 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.3 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -361,7 +361,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.2 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.3 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/featurizer_summary.html b/docs/featurizer_summary.html
@@ -6,7 +6,7 @@
   <head>
     <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>Table of Featurizers &#8212; matminer 0.4.2 documentation</title>
+    <title>Table of Featurizers &#8212; matminer 0.4.3 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" src="_static/documentation_options.js"></script>
@@ -28,7 +28,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.2 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.3 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -83,7 +83,7 @@ <h3>Parent classes and meta-featurizers.<a class="headerlink" href="#parent-clas
 </thead>
 <tbody valign="top">
 <tr class="row-even"><td><code class="code docutils literal notranslate"><span class="pre">MultipleFeaturizer</span></code></td>
-<td>Class that runs multiple featurizers on the same data <a class="reference external" href="https://hackingmaterials.github.io/matminer/matminer.featurizers.html#matminer.featurizers.base.MultipleFeaturizer">[more]</a></td>
+<td><a class="reference external" href="https://hackingmaterials.github.io/matminer/matminer.featurizers.html#matminer.featurizers.base.MultipleFeaturizer">[more]</a></td>
 </tr>
 <tr class="row-odd"><td><code class="code docutils literal notranslate"><span class="pre">StackedFeaturizer</span></code></td>
 <td><a class="reference external" href="https://hackingmaterials.github.io/matminer/matminer.featurizers.html#matminer.featurizers.base.StackedFeaturizer">[more]</a></td>
@@ -432,7 +432,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.2 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.4.3 documentation</a> &#187;</li> 
       </ul>
     </div>