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fix system variable error #9

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merged 1 commit into from
May 2, 2024
Merged

fix system variable error #9

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14 changes: 7 additions & 7 deletions src/proabc_2/__init__.py
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Original file line number Diff line number Diff line change
@@ -1,22 +1,22 @@
import os

HMMER_PATH = os.environ["HMMER_PATH"]
IGBLAST_PATH = os.environ["IGBLAST_PATH"]
IGDATA = os.environ["IGDATA"]
HMMER_PATH = os.environ.get("HMMER_PATH")
IGBLAST_PATH = os.environ.get("IGBLAST_PATH")
IGDATA = os.environ.get("IGDATA")

HELP_MSG = "Please check the installation instructions at <https://github.com/haddocking/proabc-2>"
HELP_MSG = "Check the installation instructions of THIRD-PARTY dependencies at `https://github.com/haddocking/proabc-2`"

if HMMER_PATH is None:
_msg = "Please set the HMMER_PATH environment variable" + os.newline + HELP_MSG
_msg = "Please set the HMMER_PATH environment variable" + os.linesep + HELP_MSG
print(_msg)
exit(1)

if IGBLAST_PATH is None:
_msg = "Please set the IGBLAST_PATH environment variable" + os.newline + HELP_MSG
_msg = "Please set the IGBLAST_PATH environment variable" + os.linesep + HELP_MSG
print(_msg)
exit(1)

if IGDATA is None:
_msg = "Please set the IGDATA environment variable" + os.newline + HELP_MSG
_msg = "Please set the IGDATA environment variable" + os.linesep + HELP_MSG
print(_msg)
exit(1)
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