Doc updates

hahnlab · Mar 7, 2019 · 4f3e703 · 4f3e703
1 parent bce1cef
commit 4f3e703
Show file tree

Hide file tree

Showing 3 changed files with 15 additions and 5 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -4,6 +4,12 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](http://keepachangelog.com/)
 and this project adheres to [Semantic Versioning](http://semver.org/).
 
+## [4.2.1] - 2019-03-15
+### Changed
+- Fixed a memory leak in situations where branch lengths were almost identical to each other
+- Improved error messages when there is an error in the family file
+- Fixed bug where the tree was printed twice in the report
+
 ## [4.2] - 2018-07-01
 ### Added
 - tree: a -i parameter is now supported to load a tree from a file.

diff --git a/Makefile.in b/Makefile.in
@@ -128,6 +128,6 @@ install: $(RELEXE)
 
 .PHONY dist:
 dist: $(AUX)
-	mkdir distro
+	mkdir -p distro
 	tar  --transform "s,^,CAFE/," -cf distro/CAFE-@PACKAGE_VERSION@.tar.gz cafe docs example libcommon libtree tests main.cpp $(AUX)
 
diff --git a/README.md b/README.md
@@ -9,18 +9,22 @@ gain and loss across a user-specified phylogenetic tree. The distribution of fam
 sizes generated under this model can provide a basis for assessing the significance 
 of the observed family size differences among taxa.
 
-CAFE v4.2 is the latest in a regular series of releases to the CAFE application. The 
+[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
+
+[![Build Status](https://travis-ci.org/hahnlab/CAFE.svg?branch=master)](https://travis-ci.org/hahnlab/CAFE)
+
+CAFE v4.2.1 is the latest in a regular series of releases to the CAFE application. The 
 manual and various tutorials may be viewed on the website (https://hahnlab.github.io/CAFE/) . This document describes how to 
-download and use CAFE v4.2. 
+download and use CAFE v4.2.1. 
 
 # Use
 
-The necessary inputs for CAFE v4.2 are:
+The necessary inputs for CAFE v4.2.1 are:
 1.  a data file containing gene family sizes for the taxa included in the 
 phylogenetic tree
 2.  a Newick formatted phylogenetic tree, including branch lengths
 
-From the inputs above, CAFE v4.2 will compute:
+From the inputs above, CAFE v4.2.1 will compute:
 1.  the maximum likelihood value of the birth & death parameter, λ (or of 
 separate birth and death parameters (λ and μ, respectively), over the whole 
 tree or for user-specified subsets of branches in the tree