Singularity

Bootstrap: docker
From: ubuntu:20.04

%help
TraitRELAX pre-copiled program version ${version}

%post
	export TZ=America/Los_Angeles
	ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone
	apt-get update 
	apt-get install -y build-essential
	apt-get install -y tzdata
	apt-get install -y cmake
	apt-get install -y git
	apt-get install -y wget
	apt-get install -y pkg-config
	apt-get install -y libgomp1
	mkdir -p ./traitrelax/exec/
    wget https://github.com/halabikeren/TraitRELAX/releases/download/1.0.1/traitrelax_v1.0.1.tar.gz
    tar -xf traitrelax_v1.0.1.tar.gz -C ./traitrelax/
	mkdir -p /traitrelax/bpp-core/build/
    cd /traitrelax/bpp-core/build/
    cmake -DCMAKE_INSTALL_PREFIX=/traitrelax/ -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE ..
    make
    make install
	mkdir -p /traitrelax/bpp-seq/build/
    cd /traitrelax/bpp-seq/build/
    cmake -DCMAKE_INSTALL_PREFIX=/traitrelax/ -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE ..
    make
    make install
	mkdir -p /traitrelax/bpp-phyl/build/
    cd /traitrelax/bpp-phyl/build/
    cmake -DCMAKE_INSTALL_PREFIX=/traitrelax/ -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE ..
    make
    make install
	cd /traitrelax/TraitRELAX/
    cmake -DCMAKE_INSTALL_PREFIX=/traitrelax/ -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE .
    make
    make install

%runscript
    cd /traitrelax/exec
    exec /traitrelax/TraitRELAX/TraitRELAX/TraitRELAX param=$@