2. Installing reMap

Run the following commands to clone the repository to an appropriate location:

git clone https://github.com/hallamlab/reMap.git

Note: If you are on a Linux or macOS machine use terminal and if you are on Windows use git bash, to run the command.

For all experiments, using a terminal (On Linux and macOS) or an Anaconda command prompt (On Windows), navigate to the src/ folder to run the commands of your choice. For example, to display reMap' running options use: python main.py --help. It should be self-contained.

System requirements:

The codebase is tested to work on Linux and Windows 10 under Python 3.8. Python 2.x isn't supported and will never be. Sorry for the inconvenience. To download and install python 3, use the documentation provided here. Installing reMap by cloning the development version from GitHub will require you to install dependencies that you do not already have preinstalled.

Please note that it is highly recommended to run reMap on a workstation with a minimum of 8 GB RAM.

Installing dependencies:

If you do not have the dependencies for reMap installed on your computer, we've listed how to download and install each one below.The required packages include:

• Anaconda
• NumPy (Version: >= 1.18)
• scikit-learn (Version: >= 0.23)
• scipy(Version: >=1.5)

To install the dependencies run the following command:

pip install -r requirements.txt