Update commands.md

hasindu2008 · Sep 9, 2024 · 29ebf1d · 29ebf1d
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Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/_docs/commands.md b/_docs/commands.md
@@ -242,8 +242,10 @@ Align nanopore events to reference k-mers (optimised nanopolish eventalign). Not
  Write output in PAF format. Introduced in f5c v1.3. Output explained in https://hasindu2008.github.io/f5c/docs/output.
 * `--sam`: 
  Write the alignment output in SAM format instead of tsv.
-* `--sam-out-version INT` 
- Sam output version (set 1 to revert to old nanopolish style format) [default: 2]. Introduced in f5c v1.3. New SAM output is explained in https://hasindu2008.github.io/f5c/docs/output. 
+* `--sam-out-version INT`: 
+ Sam output version (set 1 to revert to old nanopolish style format) [default: 2]. Introduced in f5c v1.3. New SAM output is explained in https://hasindu2008.github.io/f5c/docs/output.
+* ` --m6anet`:
+ Write output in m6anet format. Introduced in f5c v1.5.
 * `--print-read-names`: 
  Print read IDs instead of indexes.
 * `--scale-events`: