Merge pull request #24 from lamcw/travis-release

Automatic release on travis.

.travis.yml

@@ -1,66 +1,86 @@
-matrix:
+language: cpp
+compiler: g++
+
+env:
+  - CUDA_HOME=/usr/local/cuda PATH=${CUDA_HOME}/bin:${PATH}
+
+jobs:
+  addons:
+    apt:
+      packages:
+        - zlib1g-dev
   include:
-    - language: cpp
-      compiler: g++
-      os: linux
+    - name: "Ubuntu 14 local hts"
       dist: trusty
-      before_install: sudo apt-get install libhdf5-dev zlib1g-dev -y
+      addons:
+        apt:
+          packages:
+            - libhdf5-dev
       script: autoreconf && ./scripts/install-hts.sh && ./configure && make && make test
-    - language: cpp
-      compiler: 
-        - g++
-        - clang++    
-      os: linux
+    - name: "Ubuntu 16 install scripts"
       dist: xenial
-      before_install: sudo apt-get install libhdf5-dev zlib1g-dev -y
-      script: autoreconf && ./scripts/install-hts.sh && ./configure && make && make test
-    - language: cpp
-      compiler: g++
-      os: linux
-      dist: xenial
-      before_install: sudo apt-get install zlib1g-dev -y
       script: autoreconf && ./scripts/install-hdf5.sh 2> /dev/null &&./scripts/install-hts.sh && ./configure --enable-localhdf5 && make && make test
-    - language: cpp
-      compiler: g++
+    - name: "Ubuntu 16 pure make"
       os: linux
       dist: xenial
-      before_install: sudo apt-get install zlib1g-dev -y
       script: make && make test
-    - language: cpp
-      compiler: g++
+    - name: "OSX local hts"
       os: osx
-      before_install: brew install hdf5
+      addons:
+        homebrew:
+          packages:
+            - hdf5
       script: autoreconf && ./scripts/install-hts.sh && ./configure && make && make test              
-    - language: cpp
-      compiler: g++
+    - name: "OSX pure make"
       os: osx
       script: make && make test
-    - language: cpp
-      os: linux
+    - name: "Ubuntu 14 cuda 7.0"
       dist: trusty
-      before_install: 
-        - sudo apt-get install libhdf5-dev zlib1g-dev -y
+      addons:
+        apt:
+          packages:
+            - libhdf5-dev
+      before_script: 
         - wget http://developer.download.nvidia.com/compute/cuda/repos/ubuntu1404/x86_64/cuda-repo-ubuntu1404_7.0-28_amd64.deb
         - sudo dpkg -i cuda-repo-ubuntu1404_7.0-28_amd64.deb
         - sudo apt-get update -qq
         - sudo apt-get install -y cuda-drivers cuda-core-7-0 cuda-cudart-dev-7-0
         - sudo apt-get clean
-        - sudo ln -s /usr/local/cuda-7.0/ /usr/local/cuda
-        - CUDA_HOME=/usr/local/cuda/
-        - PATH=${CUDA_HOME}/bin:${PATH} 
+        - sudo ln -s /usr/local/cuda-7.0/ ${CUDA_HOME}
       script: autoreconf && ./scripts/install-hts.sh && ./configure && make cuda=1 
-    - language: cpp
-      os: linux
+    - name: "Ubuntu 14 cuda 6.5"
       dist: trusty
-      before_install: 
-        - sudo apt-get install zlib1g-dev -y
+      before_script: 
         - wget http://developer.download.nvidia.com/compute/cuda/repos/ubuntu1404/x86_64/cuda-repo-ubuntu1404_7.0-28_amd64.deb
         - sudo dpkg -i cuda-repo-ubuntu1404_7.0-28_amd64.deb
         - sudo apt-get update -qq
         - sudo apt-get install -y cuda-drivers cuda-core-6-5 cuda-cudart-dev-6-5
         - sudo apt-get clean
-        - sudo ln -s /usr/local/cuda-6.5/ /usr/local/cuda
-        - CUDA_HOME=/usr/local/cuda/
-        - PATH=${CUDA_HOME}/bin:${PATH} 
+        - sudo ln -s /usr/local/cuda-6.5/ ${CUDA_HOME}
       script: make cuda=1
-
+    - stage: deploy
+      name: "GitHub Release"
+      dist: trusty
+      before_script: 
+        - wget http://developer.download.nvidia.com/compute/cuda/repos/ubuntu1404/x86_64/cuda-repo-ubuntu1404_7.0-28_amd64.deb
+        - sudo dpkg -i cuda-repo-ubuntu1404_7.0-28_amd64.deb
+        - sudo apt-get update -qq
+        - sudo apt-get install -y cuda-drivers cuda-core-6-5 cuda-cudart-dev-6-5
+        - sudo apt-get clean
+        - sudo ln -s /usr/local/cuda-6.5/ ${CUDA_HOME}
+      script:
+        - make cuda=1 && mv ./f5c ./f5c_x86_64_linux_cuda && make clean
+        - make && mv ./f5c ./f5c_x86_64_linux
+      deploy:
+        provider: releases
+        api_key:
+          secure: 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
+        file_glob: true
+        file: "./f5c* ./f5c-*.tar.gz"
+        skip_cleanup: true
+        on:
+          branch: master
+          repo: hasindu2008/f5c
+          tags: true
+      before_deploy:
+        - make dist

Makefile

@@ -20,7 +20,7 @@ OBJ = $(BUILD_DIR)/main.o \
       $(BUILD_DIR)/hmm.o
 
 PREFIX = /usr/local
-VERSION = 1.0
+VERSION = `git describe --tags`
 
 ifdef cuda
     DEPS_CUDA = src/f5c.h src/fast5lite.h src/error.h src/f5cmisc.cuh