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@hgb-bin-proteomics

FHOOE Hagenberg Bioinformatics/Proteomics Research Group

Bioinformatics/Proteomics Research Group of the FH OOE Hagenberg
README.md

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  1. MSAnnika MSAnnika Public

    MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of MS2-cleavable crosslinkers from MS2 and MS3 spectra.

    4

  2. MSAnnika_Extensions MSAnnika_Extensions Public

    List of all available extensions for our cross-linking search engine MS Annika.

  3. MSAnnika_exporters MSAnnika_exporters Public

    Export MS Annika crosslink results to different formats.

    Python 1

  4. MSAnnika_Spectral_Library_exporter MSAnnika_Spectral_Library_exporter Public

    Generate a spectral library for Spectronaut from MS Annika results.

    Python

  5. MSAnnika_FDR MSAnnika_FDR Public

    A script and functions to group and validate MS Annika results.

    Python

  6. MSAnnika_MS3_Results MSAnnika_MS3_Results Public archive

    Results and Evaluation of the MS3 Search Algorithm of MS Annika.

    Jupyter Notebook

Repositories

Showing 10 of 16 repositories
  • MSAnnika Public

    MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of MS2-cleavable crosslinkers from MS2 and MS3 spectra.

    hgb-bin-proteomics/MSAnnika’s past year of commit activity
    4 0 6 1 Updated Jul 30, 2024
  • MSAnnika_Spectral_Library_exporter Public

    Generate a spectral library for Spectronaut from MS Annika results.

    hgb-bin-proteomics/MSAnnika_Spectral_Library_exporter’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Jul 22, 2024
  • .github Public

    GitHub Profile

    hgb-bin-proteomics/.github’s past year of commit activity
    0 0 0 0 Updated Jul 2, 2024
  • dotnet_template Public template Forked from michabirklbauer/dotnet_template

    A template repository for building and testing .NET commandline applications.

    hgb-bin-proteomics/dotnet_template’s past year of commit activity
    C# 0 MIT 1 0 0 Updated Jun 30, 2024
  • MSAnnika_Extensions Public

    List of all available extensions for our cross-linking search engine MS Annika.

    hgb-bin-proteomics/MSAnnika_Extensions’s past year of commit activity
    0 MIT 0 0 0 Updated Jun 21, 2024
  • MSAnnika_exporters Public

    Export MS Annika crosslink results to different formats.

    hgb-bin-proteomics/MSAnnika_exporters’s past year of commit activity
    Python 1 MIT 0 1 (1 issue needs help) 0 Updated Jun 21, 2024
  • Proteome_Discoverer_MGF_Scan_Number_Repair_Tool Public

    A simple python script to fix scan numbers in result files generated by Proteome Discoverer.

    hgb-bin-proteomics/Proteome_Discoverer_MGF_Scan_Number_Repair_Tool’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 19, 2024
  • MSAnnika_FDR Public

    A script and functions to group and validate MS Annika results.

    hgb-bin-proteomics/MSAnnika_FDR’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 19, 2024
  • python_template Public template Forked from michabirklbauer/python_template

    A template repository for linting, testing, GUI building and dockerizing python scripts.

    hgb-bin-proteomics/python_template’s past year of commit activity
    Python 0 MIT 1 0 0 Updated May 26, 2024
  • peptide_matching_game Public Forked from michabirklbauer/peptide_matching_game

    Peptide Matching Game

    hgb-bin-proteomics/peptide_matching_game’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Feb 26, 2024
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