pre-commit run --all-files

.coveragerc

@@ -1,3 +1,2 @@
 [run]
 omit = nbkode/testsuite/*
-

.github/workflows/docs.yml

@@ -43,4 +43,3 @@ jobs:
 
       - name: Doc Tests
         run: sphinx-build -a -j auto -b doctest -d build/doctrees docs build/doctest
-

.github/workflows/lint.yml

@@ -14,4 +14,4 @@ jobs:
       - name: Lint
         uses: pre-commit/action@v2.0.0
         with:
-          extra_args: --all-files --show-diff-on-failure 
+          extra_args: --all-files --show-diff-on-failure

CHANGES

@@ -22,9 +22,9 @@ numbakit-ode Changelog
 ----------------
 
 - Moved t_bound check to Solver class.
-- Created ALIAS API to allow multiple names for solvers while keeping 
+- Created ALIAS API to allow multiple names for solvers while keeping
   a preferred one.
-- Changed import system in module.. 
+- Changed import system in module..
 - Reorganized solvers into multistep and rungekutta.
 
 

benchmarks/__init__.py

@@ -1,9 +1,9 @@
 """
-    benchmarks
-    ~~~~~~~~~~
+benchmarks
+~~~~~~~~~~
 
-    Measure, as much as you can.
+Measure, as much as you can.
 
-    :copyright: 2020 by nbkode Authors, see AUTHORS for more details.
-    :license: BSD, see LICENSE for more details.
+:copyright: 2020 by nbkode Authors, see AUTHORS for more details.
+:license: BSD, see LICENSE for more details.
 """

benchmarks/against_scipy.py

@@ -1,11 +1,11 @@
 """
-    benchmarks.against_scipy
-    ~~~~~~~~~~~~~~~~~~~~~~~~
+benchmarks.against_scipy
+~~~~~~~~~~~~~~~~~~~~~~~~
 
-    Comparisons using SciPy as a gold standard.
+Comparisons using SciPy as a gold standard.
 
-    :copyright: 2020 by nbkode Authors, see AUTHORS for more details.
-    :license: BSD, see LICENSE for more details.
+:copyright: 2020 by nbkode Authors, see AUTHORS for more details.
+:license: BSD, see LICENSE for more details.
 """
 
 import numpy as np

benchmarks/common.py

@@ -1,12 +1,11 @@
 """
-    benchmarks.common
-    ~~~~~~~~~~~~~~~~~
+benchmarks.common
+~~~~~~~~~~~~~~~~~
 
-    :copyright: 2020 by nbkode Authors, see AUTHORS for more details.
-    :license: BSD, see LICENSE for more details.
+:copyright: 2020 by nbkode Authors, see AUTHORS for more details.
+:license: BSD, see LICENSE for more details.
 """
 
-
 from enum import IntEnum, auto
 
 

benchmarks/nbcompat.py

@@ -1,9 +1,9 @@
 """
-    benchmarks.nbcompat
-    ~~~~~~~~~~~~~~~~~~~
+benchmarks.nbcompat
+~~~~~~~~~~~~~~~~~~~
 
-    :copyright: 2020 by nbkode Authors, see AUTHORS for more details.
-    :license: BSD, see LICENSE for more details.
+:copyright: 2020 by nbkode Authors, see AUTHORS for more details.
+:license: BSD, see LICENSE for more details.
 """
 
 from numba import njit
@@ -35,7 +35,6 @@ def njit_newton(func, x0, fprime):
 
 
 class Suite:
-
     param_names = "variant", "numba"
     params = (["scipy", "simple", "nbkode"], [True, False])
 

benchmarks/numba.py

@@ -1,11 +1,11 @@
 """
-    benchmarks.against_scipy
-    ~~~~~~~~~~~~~~~~~~~~~~~~
+benchmarks.against_scipy
+~~~~~~~~~~~~~~~~~~~~~~~~
 
-    Comparisons of the different methods with and without numba.
+Comparisons of the different methods with and without numba.
 
-    :copyright: 2020 by nbkode Authors, see AUTHORS for more details.
-    :license: BSD, see LICENSE for more details.
+:copyright: 2020 by nbkode Authors, see AUTHORS for more details.
+:license: BSD, see LICENSE for more details.
 """
 
 import os

docs/_templates/sidebarintro.html

@@ -16,5 +16,3 @@ <h3>Useful Links</h3>
   <li><a href="https://github.com/hgrecco/numbakit-ode">Code in GitHub</a></li>
   <li><a href="https://github.com/hgrecco/numbakit-ode/issues">Issue Tracker</a></li>
 </ul>
-
-

docs/_themes/flask/static/flasky.css_t

@@ -8,11 +8,11 @@
 
 {% set page_width = '940px' %}
 {% set sidebar_width = '220px' %}
- 
+
 @import url("basic.css");
- 
+
 /* -- page layout ----------------------------------------------------------- */
- 
+
 body {
     font-family: 'Georgia', serif;
     font-size: 17px;
@@ -43,7 +43,7 @@ div.sphinxsidebar {
 hr {
     border: 1px solid #B1B4B6;
 }
- 
+
 div.body {
     background-color: #ffffff;
     color: #3E4349;
@@ -54,7 +54,7 @@ img.floatingflask {
     padding: 0 0 10px 10px;
     float: right;
 }
- 
+
 div.footer {
     width: {{ page_width }};
     margin: 20px auto 30px auto;
@@ -70,7 +70,7 @@ div.footer a {
 div.related {
     display: none;
 }
- 
+
 div.sphinxsidebar a {
     color: #444;
     text-decoration: none;
@@ -80,7 +80,7 @@ div.sphinxsidebar a {
 div.sphinxsidebar a:hover {
     border-bottom: 1px solid #999;
 }
- 
+
 div.sphinxsidebar {
     font-size: 14px;
     line-height: 1.5;
@@ -95,7 +95,7 @@ div.sphinxsidebarwrapper p.logo {
     margin: 0;
     text-align: center;
 }
- 
+
 div.sphinxsidebar h3,
 div.sphinxsidebar h4 {
     font-family: 'Garamond', 'Georgia', serif;
@@ -109,7 +109,7 @@ div.sphinxsidebar h4 {
 div.sphinxsidebar h4 {
     font-size: 20px;
 }
- 
+
 div.sphinxsidebar h3 a {
     color: #444;
 }
@@ -120,7 +120,7 @@ div.sphinxsidebar p.logo a:hover,
 div.sphinxsidebar h3 a:hover {
     border: none;
 }
- 
+
 div.sphinxsidebar p {
     color: #555;
     margin: 10px 0;
@@ -131,25 +131,25 @@ div.sphinxsidebar ul {
     padding: 0;
     color: #000;
 }
- 
+
 div.sphinxsidebar input {
     border: 1px solid #ccc;
     font-family: 'Georgia', serif;
     font-size: 1em;
 }
- 
+
 /* -- body styles ----------------------------------------------------------- */
- 
+
 a {
     color: #004B6B;
     text-decoration: underline;
 }
- 
+
 a:hover {
     color: #6D4100;
     text-decoration: underline;
 }
- 
+
 div.body h1,
 div.body h2,
 div.body h3,
@@ -169,25 +169,25 @@ div.indexwrapper h1 {
     height: {{ theme_index_logo_height }};
 }
 {% endif %}
- 
+
 div.body h1 { margin-top: 0; padding-top: 0; font-size: 240%; }
 div.body h2 { font-size: 180%; }
 div.body h3 { font-size: 150%; }
 div.body h4 { font-size: 130%; }
 div.body h5 { font-size: 100%; }
 div.body h6 { font-size: 100%; }
- 
+
 a.headerlink {
     color: #ddd;
     padding: 0 4px;
     text-decoration: none;
 }
- 
+
 a.headerlink:hover {
     color: #444;
     background: #eaeaea;
 }
- 
+
 div.body p, div.body dd, div.body li {
     line-height: 1.4em;
 }
@@ -234,20 +234,20 @@ div.note {
     background-color: #eee;
     border: 1px solid #ccc;
 }
- 
+
 div.seealso {
     background-color: #ffc;
     border: 1px solid #ff6;
 }
- 
+
 div.topic {
     background-color: #eee;
 }
- 
+
 p.admonition-title {
     display: inline;
 }
- 
+
 p.admonition-title:after {
     content: ":";
 }
@@ -341,7 +341,7 @@ ul, ol {
     margin: 10px 0 10px 30px;
     padding: 0;
 }
- 
+
 pre {
     background: #eee;
     padding: 7px 30px;
@@ -358,7 +358,7 @@ dl dl pre {
     margin-left: -90px;
     padding-left: 90px;
 }
- 
+
 tt {
     background-color: #ecf0f3;
     color: #222;

docs/_themes/flask/theme.conf

@@ -6,5 +6,5 @@ pygments_style = flask_theme_support.FlaskyStyle
 [options]
 index_logo = ''
 index_logo_height = 120px
-touch_icon = 
+touch_icon =
 github_fork = hgrecco/numbakit-ode

docs/conf.py

@@ -11,13 +11,13 @@
 # All configuration values have a default; values that are commented out
 # serve to show the default.
 
+import datetime
 import warnings
 
 import numba
 
 warnings.filterwarnings("ignore", category=numba.NumbaExperimentalFeatureWarning)
 
-import datetime
 
 try:
     from importlib.metadata import version

docs/developers_reference.rst

@@ -77,4 +77,3 @@ Variable step
 |
 
 .. autoclass:: nbkode.RungeKutta45
-

docs/events.rst

@@ -82,9 +82,9 @@ are found.
     >>> print(t_events[0]) # hit ground time  # doctest: +SKIP
     >>> print(t_events[1]) # apex time  # doctest: +SKIP
 
-.. note:: 
+.. note::
     **Important**
 
     Event callables are compiled into the tight loop that runs the simulation
     using Numba. Therefore, just like the ODE rhs, these callables **must**
-    compatible with Numba jit in nopython mode (`njit`)
+    compatible with Numba jit in nopython mode (`njit`)

docs/faq.rst

@@ -74,5 +74,3 @@ code.
 .. _`SciPy Integrate`: https://docs.scipy.org/doc/scipy/reference/integrate.html
 .. _`Numba`: https://numba.pydata.org/
 .. _`benchmarks`: https://hgrecco.github.io/numbakit-ode/
-
-

docs/requirements.txt

@@ -1,7 +1,7 @@
 matplotlib
 nbsphinx
-numpy
 numba
-scipy
-pytest
+numpy
 pygments>=2.4
+pytest
+scipy

docs/tutorial.rst

@@ -124,7 +124,7 @@ the integrator.
 
 .. doctest::
 
-   >>> y0 = 1. 
+   >>> y0 = 1.
    >>> p = -0.1
    >>> t0 = 0
    >>> solver = nbkode.RungeKutta45(rhs, t0, y0, params=p)
@@ -220,4 +220,3 @@ To get a list of the groups:
 
     >>> nbkode.get_groups()
     ('Adams-Bashforth', 'Adams-Moulton', 'BDF', 'Euler', 'Runge-Kutta')
-

nbkode/__init__.py

@@ -1,13 +1,13 @@
 """
-    nbkode
-    ~~~~~~
+nbkode
+~~~~~~
 
-    numbakit-ode (nbkode) is a Python package to solve
-    **ordinary differential equations (ODE)** that uses
-    numba to compile code and therefore speed up calculations.
+numbakit-ode (nbkode) is a Python package to solve
+**ordinary differential equations (ODE)** that uses
+numba to compile code and therefore speed up calculations.
 
-    :copyright: 2020 by nbkode Authors, see AUTHORS for more details.
-    :license: BSD, see LICENSE for more details.
+:copyright: 2020 by nbkode Authors, see AUTHORS for more details.
+:license: BSD, see LICENSE for more details.
 """
 
 # These imports are necessary as only when corresponding module is imported