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TODO: collecting nextflow logs #104

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kirilenkobm opened this issue Oct 3, 2023 · 1 comment
Open

TODO: collecting nextflow logs #104

kirilenkobm opened this issue Oct 3, 2023 · 1 comment
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code improvements Everything related to code optimisation, refactoring, simplification, etc. enhancement New feature or request nextflow Issues related to nextflow

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@kirilenkobm
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Nextflow creates quite a sophisticated structure of folders, files, and hidden files, where it stores the run information.
Need to find, or implement a module (maybe a separate library?) to collect these logs and provide an adequate representation of them.

@kirilenkobm kirilenkobm added nextflow Issues related to nextflow code improvements Everything related to code optimisation, refactoring, simplification, etc. labels Oct 3, 2023
@kirilenkobm
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kirilenkobm commented Oct 3, 2023

According to ChatGPT4:

You can use Nextflow's built-in log command to aggregate detailed info about every job. This command supports options to customize the fields shown, use templates for formatting, and filter the entries. For instance, you can use nextflow log -f hash,name,exit,status to display specific fields or nextflow log -filter 'status == "FAILED"' to filter entries. You can also create a custom report in a text-based format using templates​1​.

worth trying.

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code improvements Everything related to code optimisation, refactoring, simplification, etc. enhancement New feature or request nextflow Issues related to nextflow
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