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23 Open 143 Closed
23 Open 143 Closed
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Issues list

Question about the input of extract_codon_alignment.py
#194 opened Dec 16, 2024 by SWei2333
3
map gene ids back to gff
#191 opened Nov 15, 2024 by mili-ai
1
how to set paramenters without cluster?
#186 opened Oct 15, 2024 by mili-ai
7
Some target isoforms not in the orthology classification file
#184 opened Sep 24, 2024 by vpymerel
1
CDS length not divisible 3
#182 opened Aug 28, 2024 by DEYANIK
1
Error in Step 8, merge_cesar_jobs: CRITICAL: could not extract any bed lines from the CESAR output, abort
#175 opened Jul 12, 2024 by shuifeng1988
1
Some individual CESAR jobs crashed in TOGA.
#174 opened Jul 10, 2024 by ZhaoHang-bio
2
Error at STEP 9
#166 opened Jun 5, 2024 by molinfzlvvv
5
About extracting CDS and PEP from GFF files obtained from TOGA
#164 opened Jun 3, 2024 by SWei2333
41
Some nextflow processes died nextflow Issues related to nextflow
#161 opened May 20, 2024 by molinfzlvvv
3
twobit sizes do not match
#160 opened May 17, 2024 by lpnunez
10
Input file preparation
#158 opened May 6, 2024 by molinfzl
4
Question about output alignments
#157 opened Apr 24, 2024 by d6948739
1
Bed file error
#156 opened Apr 22, 2024 by LliliansCalvo
13
Index error with plot_mutations.py bug Something isn't working
#148 opened Feb 20, 2024 by smorzechowski
4
HAL alignments and chaining: post processing TOGA outputs
#143 opened Jan 31, 2024 by vinitamehlawat
10
ValueError: invalid literal for int() with base 10: '.' bug Something isn't working
#142 opened Jan 26, 2024 by YanCheer
2
Cache entry deserialization failed, entry ignored usecase Issues related to various use cases - to documentation
#140 opened Jan 13, 2024 by vinitamehlawat
7
old Java version on run_test.sh micro ValueError: Chain results file TOGA/micro_test_out/temp/chain_results_df.tsv is empty! Abort bug Something isn't working nextflow Issues related to nextflow
#131 opened Dec 13, 2023 by SomePersonSomeWhereInTheWorld
23
TOGA stops after CESAR checking results bug Something isn't working
#122 opened Nov 16, 2023 by giovannaVeiga
2
Could not split CESAR jobs bug Something isn't working
#121 opened Nov 14, 2023 by AgustoLuz
4
"CESAR wrapper command crashed" bug Something isn't working
#119 opened Nov 13, 2023 by mprincipato
3
TODO: collecting nextflow logs code improvements Everything related to code optimisation, refactoring, simplification, etc. enhancement New feature or request nextflow Issues related to nextflow
#104 opened Oct 3, 2023 by kirilenkobm
1
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