Some individual CESAR jobs crashed in TOGA.

[ZhaoHang-bio]

Hi,

I am encountering an issue while using the TOGA software. Specifically, for certain species alignments, I keep receiving the error message:

This occurs even though I have already adjusted the memory limit to 1000G.

1. How can I avoid these crashes?
2. Is it possible to re-run only the failed subprograms instead of re-running the entire process?

Thanks in advance for your help!

Best regards,
Hang Zhao

[MichaelHiller]

I assume the single CESAR job crashed because it required more memory than what you provided. Since this is the only job that crashed and everything else ran fine, this is probably not a big concern.

@kirilenkobm Could you help with re-running the single crashed job and then the rest of the TOGA pipeline? Not sure we have an easy solution for this.

We will release a new TOGA 2.0 in the next months, which will be faster and much less memory hungry.

[ZhaoHang-bio]

Hi,

Thank you for your response.

I‘m looking forward to the release of TOGA 2.0. And I hope the new version will address the issue with CESAR jobs crashing.

If it is possible to rerun some crashed jobs separately, that would be great, as it will reduce the computational workload.

Best regards,

Hang Zhao