Some target isoforms not in the orthology classification file

[vpymerel]

Hi,

Thank you for the software,

I have observed that for some genes some targets isoforms are absent for the orthology classification file,

Have you already observed that ? Is there a reason to this ?

Thank you,
Vincent

[MichaelHiller]

Hi Vincent,
I assume those genes are classified as Missing or Lost (we identify an orthologous locus but the reading frame is either not intact or too much of it is missing from the assembly (assembly gaps)).
Can you pls check how these genes are classified in the loss_summ_data.tsv?