TOGA stops after CESAR checking results

[giovannaVeiga]

Hi everyone,

I tried to run TOGA using my data and the following command (./toga.py human_mesbid/human.mesbid.final.chain human_mesbid/hg38.wgEncodeGencodeCompV34.bed human_mesbid/hg38.2bit human_mesbid/mesbid.modified.2bit --kt --pn human_mesbid_out -i human_mesbid/hg38.wgEncodeGencodeCompV34.isoforms.txt --u12 human_mesbid/hg38.U12sites.tsv --ms --cjn 32 --cb 10,100) and everything seams to work fine, but I keep having the following error message:

I tested with the same command (just changing to -cb 3,5) in the test data and it did not return any error.

I also attached the log file
toga_2023_11_14_at_18_01.log

If there is any command to continue the analysis, from this step on please let me know

Thank you in advance

[kirilenkobm]

Seems like modules.common.get_bucket_value may return None when called from toga.Toga.__rebuild_crashed_jobs which is quite absurd.
Then, toga.Toga.__check_cesar_completeness#bucket_to_jobsgets None key, tries to feed it into the process manager, it crashes because expects a number.
I just need to figure out in what kind of scenario this situation is reachable.

[lhauff]

Hello,

I've also encountered this same TypeError crashing the program at this step. Is there a recommend course of action on how to address this?

Thank you!