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1. COMBINE-lab/salmon COMBINE-lab/salmon Public

   🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

   C++ 780 164

2. COMBINE-lab/terminus COMBINE-lab/terminus Public

   Rust 57 3

3. COMBINE-lab/minnow COMBINE-lab/minnow Public

   C++ 10 2

4. COMBINE-lab/RapClust COMBINE-lab/RapClust Public

   Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes

   Python 30 6

5. COMBINE-lab/pufferfish COMBINE-lab/pufferfish Public

   An efficient index for the colored, compacted, de Bruijn graph

   C 108 20

6. COMBINE-lab/quark COMBINE-lab/quark Public

   semi-reference-based short read compression

   C++ 11 5