This organization is meant to collect histopathology related repos.
See starred repos here: https://github.com/stars/sbalci/lists/histopathology-image-analysis
See a similar list here: https://docs.google.com/spreadsheets/d/102RnHX-v-wm50rMtUn6vXWDF-L-Gsf9gEjtbe2cYjLs/edit?pli=1#gid=0
Forked from zhaoxuanma/Deeplearning-digital-pathology
Full package for applying deep learning to virtual slides.
Python 1
Forked from mahdihosseini/FQPath
No-Reference Focus Quality Assessment of Digital Pathology Images [IEEE TMI 2019]
MATLAB 1
Forked from ksugar/qupath-extension-sam
QuPath extension for Segment Anything Model (SAM)
Java 1
Forked from miccaiif/OpenAL
Official PyTorch Code of our MICCAI2023 paper OpenAL
Forked from tovaroe/WSI_histology
MATLAB functionality for working with whole slide images of histological slide scans
MATLAB 1
Forked from HenriquesLab/DL4MicEverywhere
Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
Python 1
A tool for rapidly labeling objects using deep learning feature embedding
nuclei.io: Human-in-the-loop active learning framework for pathology image analysis
Omnipose: a high-precision solution for morphology-independent cell segmentation
an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
Vim4Path: Self-Supervised Vision Mamba for Histopathology Images
Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
Notebooks for working with The Cancer Imaging Archive datasets
Web-based DICOM slide microscopy viewer library
