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biodatacatalyst-ui/src/main/webapp/picsureui/studyAccess/studyAccessUtility.js
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,77 @@ | ||
| define(["jquery", "backbone", "handlebars", "text!studyAccess/studies-data.json"], | ||
| function ($, bb, hbs, studyAccessConfiguration) { | ||
| function getStudyAccessConfiguration() { | ||
| return JSON.parse(studyAccessConfiguration); | ||
| } | ||
|
|
||
| function groupRecordsByAccess() { | ||
| // extract the consent identifiers from the query template | ||
| let session = JSON.parse(sessionStorage.getItem("session")); | ||
| let validConsents = []; | ||
| if (session.queryTemplate) { | ||
| let temp = JSON.parse(session.queryTemplate); | ||
|
|
||
| if (temp && temp.categoryFilters && temp.categoryFilters["\\_consents\\"]) { | ||
| validConsents = temp.categoryFilters["\\_consents\\"]; | ||
| } | ||
| } | ||
|
|
||
| // process the study data into permission granted or not groups | ||
| let records = { | ||
| permitted: [], | ||
| denied: [], | ||
| na: [] | ||
| }; | ||
| let configurationData = JSON.parse(studyAccessConfiguration); | ||
| for (let groupid in configurationData) { | ||
| for (idx = 0; idx < configurationData[groupid].length; idx++) { | ||
| // determine if logged in user is permmited access | ||
| let tmpStudy = configurationData[groupid][idx]; | ||
| const cvc = parseInt(tmpStudy["clinical_variable_count"]).toLocaleString(); | ||
| tmpStudy["clinical_variable_count"] = cvc == '-1' || cvc == 'NaN' ? 'N/A' : cvc; | ||
| const css = parseInt(tmpStudy["clinical_sample_size"]).toLocaleString(); | ||
| tmpStudy["clinical_sample_size"] = css == '-1' || cvc == 'NaN' ? 'N/A' : css; | ||
| const gsc = parseInt(tmpStudy["genetic_sample_size"]).toLocaleString(); | ||
| tmpStudy["genetic_sample_size"] = gsc == '-1' || gsc == 'NaN' ? 'N/A' : gsc; | ||
|
|
||
| let studyConsent = tmpStudy["study_identifier"] + (tmpStudy["consent_group_code"] && tmpStudy["consent_group_code"] != "" ? "." + tmpStudy["consent_group_code"] : ""); | ||
| tmpStudy['accession'] = tmpStudy["consent_group_code"] ? | ||
| tmpStudy["study_identifier"] + "." + tmpStudy["study_version"] + "." + tmpStudy["study_phase"] + "." + tmpStudy["consent_group_code"] : | ||
| ""; // Show empty string if no consent group code (open dataset) | ||
| if (validConsents.includes(studyConsent)) { | ||
| tmpStudy['isGranted'] = true; | ||
| records.permitted.push(tmpStudy); | ||
| } else { | ||
| if (!tmpStudy['authZ']) { | ||
| tmpStudy['isSuspended'] = true; | ||
| } | ||
| if (tmpStudy["consent_group_code"] == "c0") { | ||
| tmpStudy['isGranted'] = false; | ||
| records.na.push(tmpStudy); | ||
| } else { | ||
| records.denied.push(tmpStudy); | ||
| } | ||
| } | ||
| } | ||
| } | ||
|
|
||
| // sort by "consent group" then "abbreviated name" | ||
| var funcSort = function (a, b) { | ||
| if (a["abbreviated_name"] == b["abbreviated_name"]) { | ||
| return (a["study_identifier"].localeCompare(b["study_identifier"])); | ||
| } else { | ||
| return (a["abbreviated_name"].localeCompare(b["abbreviated_name"])); | ||
| } | ||
| }; | ||
| records.permitted.sort(funcSort); | ||
| records.denied.sort(funcSort); | ||
| records.na.sort(funcSort); | ||
|
|
||
| return records; | ||
| } | ||
|
|
||
| return { | ||
| getStudyAccessConfiguration: getStudyAccessConfiguration, | ||
| groupRecordsByAccess: groupRecordsByAccess | ||
| }; | ||
| }); |