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Add initial configuration and sample data files
Introduce application properties for database configuration and dashboard settings. Add Docker commands for local development with weights configuration. Include weights.csv as sample data and dictonaryReqeust.http for testing API requests.
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## Docker commands for local development | ||
### Docker build | ||
```bash | ||
docker build --no-cache --build-arg SPRING_PROFILE=bdc-dev -t weights:latest . | ||
``` | ||
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### Docker run | ||
You will need a local weights.csv file. | ||
```bash | ||
docker run --rm -t --name dictionary-weights --network=host -v ./weights.csv:/weights.csv weights:latest | ||
``` |
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dictionaryweights/src/main/resources/application-bdc-dev.properties
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spring.application.name=dictionaryweights | ||
spring.main.web-application-type=none | ||
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spring.datasource.url=jdbc:postgresql://localhost:5432/dictionary_db?currentSchema=dict | ||
spring.datasource.username=username | ||
spring.datasource.password=password | ||
spring.datasource.driver-class-name=org.postgresql.Driver | ||
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weights.filename=/weights.csv |
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concept_node.DISPLAY,2 | ||
concept_node.CONCEPT_PATH,2 | ||
dataset.FULL_NAME,1 | ||
dataset.DESCRIPTION,1 | ||
parent.DISPLAY,1 | ||
grandparent.DISPLAY,1 | ||
concept_node_meta_str,1 |
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# curl 'https://dev.picsure.biodatacatalyst.nhlbi.nih.gov/picsure/proxy/dictionary-api/concepts?page_number=1&page_size=1' | ||
# -H 'origin: https://dev.picsure.biodatacatalyst.nhlbi.nih.gov' | ||
# -H 'referer: https://dev.picsure.biodatacatalyst.nhlbi.nih.gov/' | ||
# --data-raw '{"facets":[],"search":"","consents":[]}' | ||
POST http://localhost:80/concepts?page_number=0&page_size=100 | ||
Content-Type: application/json | ||
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{"facets":[],"search":"lipid triglyceride"} | ||
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### | ||
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POST http://localhost:80/search | ||
Content-Type: application/json | ||
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{"@type":"GeneralQueryRequest","resourceCredentials":{},"query":{"searchTerm":"breast","includedTags":[],"excludedTags":[],"returnTags":"true","offset":0,"limit":10000000},"resourceUUID":null} |
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spring.application.name=dictionary | ||
spring.datasource.url=jdbc:postgresql://localhost:5432/dictionary_db?currentSchema=dict | ||
spring.datasource.username=username | ||
spring.datasource.password=password | ||
spring.datasource.driver-class-name=org.postgresql.Driver | ||
server.port=80 | ||
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dashboard.columns={abbreviation:'Abbreviation',name:'Name',clinvars:'Clinical Variables'} | ||
dashboard.column-order=abbreviation,name,clinvars | ||
dashboard.nonmeta-columns=abbreviation,name | ||
dashboard.enable.extra_details=true | ||
dashboard.enable.bdc_hack=true | ||
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filtering.unfilterable_concepts=stigmatized |