This repo hosts examples that serve as tutorials for the octopi, squid and the gravity machine code base.
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For setting up ths software enviroment, refer to https://github.com/hongquanli/squid-tutorials/tree/main/example_camera/software
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For setting programming the Arduino, refer to https://github.com/hongquanli/squid-tutorials/tree/main/example_led_control/firmware
[1] Hongquan Li, Hazel Soto-Montoya, Maxime Voisin, Lucas Fuentes Valenzuela, and Manu Prakash. "Octopi: Open configurable high-throughput imaging platform for infectious disease diagnosis in the field." bioRxiv (2019): 684423. [ link | github ]
[2] Hongquan Li, Deepak Krishnamurthy, Ethan Li, Pranav Vyas, Nibha Akireddy, Chew Chai, Manu Prakash, "Squid: Simplifying Quantitative Imaging Platform Development and Deployment." BiorXiv [ link | github | website]
[3] Deepak Krishnamurthy, Hongquan Li, François Benoit du Rey, Pierre Cambournac, Adam G. Larson, Ethan Li, and Manu Prakash. "Scale-free vertical tracking microscopy." Nature Methods 17, no. 10 (2020): 1040-1051. [ link | github | website ]