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hoogenboom-group

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  1. PSF-Extractor PSF-Extractor Public

    Characterize the PSF of an optical setup

    Jupyter Notebook 8

  2. SF SF Public

    Depth-dependent axial rescaling of 3D fluorescence microscopy data sets

    Jupyter Notebook 4 1

Repositories

Showing 10 of 19 repositories
  • fastem-sofima Public

    Scable Optical Flow-based Image Alignment (SOFIMA) of FAST-EM datasets.

    hoogenboom-group/fastem-sofima’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 1 (1 issue needs help) 0 Updated Nov 29, 2024
  • mitonet-seg Public

    MitoNet inference on Volume EM datasets

    hoogenboom-group/mitonet-seg’s past year of commit activity
    Python 0 0 1 0 Updated Nov 28, 2024
  • interactive-render-workflow Public

    Interactive workflow for aligning volume electron microscopy datasets.

    hoogenboom-group/interactive-render-workflow’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 4 0 Updated Nov 27, 2024
  • scripted-render-pipeline Public

    automated pipeline interfacing with render-ws rest api

    hoogenboom-group/scripted-render-pipeline’s past year of commit activity
    Python 0 GPL-3.0 0 7 (1 issue needs help) 1 Updated Nov 19, 2024
  • em-infrastructure Public

    Documentation and configuration for Electron Microscopy server infrastructure

    hoogenboom-group/em-infrastructure’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Nov 5, 2024
  • catmaid-docker Public Forked from catmaid/catmaid-docker

    Docker compose application for CATMAID

    hoogenboom-group/catmaid-docker’s past year of commit activity
    Shell 0 3 0 0 Updated Nov 1, 2024
  • Kievits-OSTEM-2023 Public

    Code and analysis for publication titled "Optical STEM detection for scanning electron microscopy"

    hoogenboom-group/Kievits-OSTEM-2023’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Sep 24, 2024
  • Kievits-FASTEM-array-tomography-2024 Public
    hoogenboom-group/Kievits-FASTEM-array-tomography-2024’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jul 4, 2024
  • iCAT-workflow Public

    Post-processing workflow for integrated correlative array tomography (iCAT)

    hoogenboom-group/iCAT-workflow’s past year of commit activity
    Jupyter Notebook 2 CC-BY-4.0 0 3 0 Updated Jun 7, 2024
  • SF Public

    Depth-dependent axial rescaling of 3D fluorescence microscopy data sets

    hoogenboom-group/SF’s past year of commit activity
    Jupyter Notebook 4 CC-BY-4.0 1 0 0 Updated Jun 1, 2024
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