Add unit test to ensure changes to adam fn only invalidate targets th…

…at use those functions (#37)

* Add unit test to ensure changes to adam fn only invalidate targets that use those functions

* Fix rmd check and remove crew from used packags. This is because we have not enable parallel 'out-of-the-box'. Users can still enable parallel

* Increment version number to 0.1.1

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: chef
 Title: Framework for generating statistical evidence
-Version: 0.1.0
+Version: 0.1.1
 Authors@R: c(
  person("MEWP (Matthew David Phelps)", , , "mewp@novonordisk.com", role = "aut"),
  person("NOSJ (Nicolai Skov Johnsen)", , , "nosj@novonordisk.com", role = "aut"),
@@ -28,7 +28,6 @@ Imports:
  usethis,
  purrr,
  stats,
- crew
 Suggests:
  covr,
  fs,
@@ -54,4 +53,6 @@ Config/testthat/edition: 3
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.3.1
-URL: https://hta-pharma.github.io/chef/
+URL: 
+ https://hta-pharma.github.io/chef/,
+ https://github.com/hta-pharma/chef

NEWS.md

@@ -0,0 +1,5 @@
+# chef 0.1.1
+
+# chef 0.1.0
+
+* Initial release.

R/fetch_db_data.R

@@ -31,8 +31,8 @@ fetch_db_data <-
 
  adam <- fn_dt[fn_type == "data_prepare"]
  adam[, c("dat", "error_flag", "error_msg") := eval_data_fn(
- study_metadata = study_metadata,
- fn = fn_callable
+ fn_list = fn_callable,
+ study_metadata = study_metadata
  ),
  by =
  seq_len(nrow(adam))

_pkgdown.yml

@@ -1,3 +1,21 @@
 url: https://hta-pharma.github.io/chef/
 template:
  bootstrap: 5
+ bootswatch: flatly
+
+home:
+ links:
+ - text: HTA-R openstatsware workstream
+ href: https://www.openstatsware.org/hta_page.html
+ - text: ramnog
+ href: https://hta-pharma.github.io/ramnog/
+ - text: chefStats
+ href: https://hta-pharma.github.io/chefStats/
+ - text: chefCriteria
+ href: https://hta-pharma.github.io/chefCriteria
+
+
+navbar:
+ structure:
+ left: [reference, news]
+ right: [github]

inst/templates/packages_template.R

@@ -5,4 +5,3 @@ library(targets)
 library(tarchetypes)
 library(magrittr)
 library(data.table)
-library(crew)

pkgdown/extra.css

@@ -0,0 +1,8 @@
+.dropdown-header {
+ font-size: 1.2rem;
+ color: #494646;
+ font-weight: 700;
+}
+.text-muted {
+ color: #8f9c9d !important;
+}