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Documentation cleanup and centralization of CI-CD to ramnog. #29

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merged 4 commits into from
Mar 26, 2024

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HenrikSpiegel
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matthew-phelps and others added 4 commits March 19, 2024 16:37
* Move dev related texted out of main page and into dev page

* Deleting articles that live in ramnog

* Removing documentation that was moved to ramnog package

* Apply stylr to whole package

* Update README
* Adding global vars to pass R CMD check

* Fix merge conflicts
* Centralize pre-commit and git-action to hta-pharma/ramnog

* Consume workflows from ramnog@main instead of dev branch

* Added reference to ramnog

* Rename so that it matches workflows

* Remove un-used argument in use_chef

---------

Co-authored-by: Henrik Sparre Spiegelhauer (HSPU) <hspu@novonordisk.com>
Co-authored-by: Matthew Phelps <mewp@novonordisk.com>
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codecov bot commented Mar 26, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 89.89%. Comparing base (d297994) to head (db90114).

Additional details and impacted files
@@           Coverage Diff           @@
##             main      #29   +/-   ##
=======================================
  Coverage   89.89%   89.89%           
=======================================
  Files          25       25           
  Lines        1296     1296           
=======================================
  Hits         1165     1165           
  Misses        131      131           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

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Test Results

  1 files  ±0   23 suites  ±0   45s ⏱️ -3s
125 tests ±0  125 ✅ ±0  0 💤 ±0  0 ❌ ±0 
522 runs  ±0  522 ✅ ±0  0 💤 ±0  0 ❌ ±0 

Results for commit db90114. ± Comparison against base commit d297994.

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Test Results

  1 files  ±0   23 suites  ±0   45s ⏱️ -3s
125 tests ±0  125 ✅ ±0  0 💤 ±0  0 ❌ ±0 
522 runs  ±0  522 ✅ ±0  0 💤 ±0  0 ❌ ±0 

Results for commit db90114. ± Comparison against base commit d297994.

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Code coverage

Name Coverage (%)
chef 89.82
R/add_event_index.R 100.00
R/add_id.R 100.00
R/apply_criterion.R 99.17
R/apply_stats.R 96.30
R/check_duplicate_functions.R 100.00
R/construct_data_filter_logic.R 95.24
R/eval_fn.R 86.11
R/evaluate_criteria.R 0.00
R/expand_endpoints.R 97.86
R/fetch_db_data.R 82.50
R/filter_db_data.R 100.00
R/global.R 0.00
R/group_ep_for_targets.R 100.00
R/handle_mk_fn.R 84.06
R/mk_endpoint_str.R 93.75
R/mk_userdef_fn_dt.R 73.33
R/parse_function_inputs.R 85.71
R/prepare_for_stats.R 99.27
R/try_and_validate.R 67.55
R/unnest_by_fns.R 100.00
R/unnest_endpoint_functions.R 90.91
R/use_chef.R 91.55
R/utils.R 100.00
R/validate_endpoints_def.R 77.50
R/validate_usr_fn_args.R 98.62

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Github pages

Review the pkgdown webpage for the PR here

@matthew-phelps matthew-phelps merged commit bea5854 into main Mar 26, 2024
22 checks passed
@matthew-phelps matthew-phelps deleted the dev branch March 26, 2024 13:09
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2 participants