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Adds updated workflows for testing and releasing (#3)
* Adds updated workflows for testing and releasing * Adds junit as reporter * Extends the test reporting * Updated test flow with unittests * Dynamic grab package name * fixing pkg name extract * . * fix typo * more typoes * Merged rebase * Trying to get github pages working (#10) * Add dummy function to import data.table for unit-tests. Probably a cleaner waer way to do this * Fix broken unit test in QA vignette * Update results data model vignette * Fix R CMD checks * Try to get website deployed * Test if using usethis::use_pkgdown_github_pages() worked * Updating pkgdown yaml to try and get it to publish * Trying to get github pages working * Fixes end-of-file-fixer to exclude snaps * Setup package-check and release with workflow_call to allow dispatches from other pipes * Various end of file fixing * disable pii leaks check - still does gitleaks * Setup shared pre-commit hooks * Add remaining files for sharing pre-commits * Updated snapshot due to new sorting --------- Co-authored-by: Henrik Sparre Spiegelhauer (HSPU) <hspu@novonordisk.com> Co-authored-by: Matthew Phelps <ma.phelps@gmail.com>
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,23 @@ | ||
| on: | ||
| push: | ||
| branches: main | ||
| pull_request: | ||
| branches: main | ||
| workflow_dispatch: | ||
| workflow_call: | ||
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| name: Release Package 🚀 | ||
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| jobs: | ||
| build: | ||
| name: RMD Build and check | ||
| uses: ./.github/workflows/R-CMD-check.yaml | ||
| docs: | ||
| needs: build | ||
| name: Build and Deploy Docs | ||
| uses: ./.github/workflows/pkgdown.yaml | ||
| release: | ||
| needs: [build, docs] | ||
| name: Release | ||
| if: github.event_name != 'pull_request' | ||
| uses: ./.github/workflows/release.yaml |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,22 @@ | ||
| name: Fast Forward PR | ||
| on: | ||
| issue_comment: | ||
| types: [created] | ||
|
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| jobs: | ||
| fast_forward_job: | ||
| name: Fast Forward | ||
| if: github.event.issue.pull_request != '' && contains(github.event.comment.body, '/fast-forward') | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| # To use this repository's private action, you must check out the repository | ||
| - name: Checkout | ||
| uses: actions/checkout@v2 | ||
| # Basic use case example | ||
| - name: Fast Forward PR | ||
| id: ff-action | ||
| uses: endre-spotlab/fast-forward-js-action@2.1 | ||
| with: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| success_message: 'Success! Fast forwarded ***target_base*** to ***source_head***! ```git checkout target_base && git merge source_head --ff-only``` ' | ||
| failure_message: 'Failed! Cannot do fast forward! - try merging the target back into source first.' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,49 +1,88 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| push: | ||
| branches: [main, master] | ||
| pull_request: | ||
| branches: [main, master, dev] | ||
| release: | ||
| types: [published] | ||
| workflow_dispatch: | ||
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| name: pkgdown | ||
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| jobs: | ||
| pkgdown: | ||
| runs-on: ubuntu-latest | ||
| # Only restrict concurrency for non-PR jobs | ||
| concurrency: | ||
| group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| permissions: | ||
| contents: write | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
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| - uses: r-lib/actions/setup-pandoc@v2 | ||
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| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| use-public-rspm: true | ||
|
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| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: any::pkgdown, local::. | ||
| needs: website | ||
|
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| - name: Build site | ||
| run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | ||
| shell: Rscript {0} | ||
|
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| - name: Deploy to GitHub pages 🚀 | ||
| if: github.event_name != 'pull_request' | ||
| uses: JamesIves/github-pages-deploy-action@v4.5.0 | ||
| with: | ||
| clean: false | ||
| branch: gh-pages | ||
| folder: docs | ||
| # Workflow adjusted from usethis::use_pkgdown_github_pages() to also publish pages from PRs in a subfolder | ||
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| on: | ||
| # push: | ||
| # branches: [main, master] | ||
| # pull_request: | ||
| # branches: [main, master] | ||
| # release: | ||
| # types: [published] | ||
| workflow_dispatch: | ||
| workflow_call: | ||
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| permissions: | ||
| contents: write | ||
| pull-requests: write | ||
|
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| name: pkgdown | ||
|
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| jobs: | ||
| pkgdown: | ||
| runs-on: ubuntu-latest | ||
| # Only restrict concurrency for non-PR jobs | ||
| concurrency: | ||
| group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
|
|
||
| - uses: r-lib/actions/setup-pandoc@v2 | ||
|
|
||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| use-public-rspm: true | ||
|
|
||
| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: any::pkgdown, local::. | ||
| needs: website | ||
|
|
||
| - name: Build site | ||
| run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | ||
| shell: Rscript {0} | ||
|
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||
| # If not pull request a brand new webpage is deployed | ||
|
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||
| - name: Deploy to GitHub pages 🚀 | ||
| if: github.event_name != 'pull_request' | ||
| uses: JamesIves/github-pages-deploy-action@v4.5.0 | ||
| with: | ||
| clean: false | ||
| branch: gh-pages | ||
| folder: docs | ||
|
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| # If pull request the webpage is deployed inside a dev/"PR number" folder for review | ||
|
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| - name: Add pkgdown PR Comment | ||
| uses: marocchino/sticky-pull-request-comment@v2 | ||
| if: github.event_name == 'pull_request' | ||
| with: | ||
| recreate: true | ||
| header: pkgdown | ||
| message: | | ||
| # Github pages | ||
| Review the pkgdown webpage for the PR [here](https://${{ github.repository_owner }}.github.io/${{ github.event.repository.name }}/dev/${{ github.event.pull_request.number }}) | ||
| - name: Copy page to temp folder | ||
| if: github.event_name == 'pull_request' | ||
| run: | | ||
| mkdir -p /home/runner/work/dev | ||
| cp -r ./docs/* /home/runner/work/dev | ||
| - name: Check out gh-pages branch | ||
| if: github.event_name == 'pull_request' | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| ref: gh-pages | ||
|
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| - name: Copy and push to gh-pages | ||
| if: github.event_name == 'pull_request' | ||
| run: | | ||
| mkdir -p dev/${{ github.event.pull_request.number }} | ||
| cp -r /home/runner/work/dev/* ./dev/${{ github.event.pull_request.number }} | ||
| git config --global user.email "actions-robot@novonordisk.com" | ||
| git config --global user.name "Actions Robot From Github Actions" | ||
| git add . | ||
| git commit -m "Update gh pages from the PR" | ||
| git push |
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