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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 12 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 5

Repositories

Showing 10 of 177 repositories
  • ingest-api Public
    hubmapconsortium/ingest-api’s past year of commit activity
    Python 0 MIT 0 22 1 Updated Jan 3, 2025
  • user_workspaces_server Public
    hubmapconsortium/user_workspaces_server’s past year of commit activity
    Python 0 MIT 1 6 1 Updated Jan 3, 2025
  • portal-containers Public

    Docker containers to pre-process data for visualization in the portal

    hubmapconsortium/portal-containers’s past year of commit activity
    Python 0 MIT 1 22 (1 issue needs help) 28 Updated Jan 3, 2025
  • rna-data-products Public
    hubmapconsortium/rna-data-products’s past year of commit activity
    Python 0 GPL-3.0 0 3 0 Updated Jan 3, 2025
  • ccf-validation-tools Public

    HRA ASCT+B Validation Reports

    hubmapconsortium/ccf-validation-tools’s past year of commit activity
    Python 6 Apache-2.0 1 4 3 Updated Jan 1, 2025
  • hra-kg Public

    HRA-KG: Human Reference Atlas Knowledge Graph

    hubmapconsortium/hra-kg’s past year of commit activity
    Mermaid 2 MIT 1 4 0 Updated Dec 29, 2024
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui’s past year of commit activity
    TypeScript 12 MIT 2 200 34 Updated Dec 24, 2024
  • rna-probes-pipeline Public Forked from hubmapconsortium/visium-pipeline
    hubmapconsortium/rna-probes-pipeline’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Dec 20, 2024
  • soft-assay-rules Public

    Rules for "soft" assay classification, and tools to generate and test them.

    hubmapconsortium/soft-assay-rules’s past year of commit activity
    Python 0 MIT 0 0 2 Updated Dec 19, 2024
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline’s past year of commit activity
    Python 4 MIT 5 79 15 Updated Dec 19, 2024
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