Registration of Whole Slide Images(WSIs)

1. Registering H&E and IHC Slides

How to run

you can answer target & source image path by following questions;

• "1 for Dir or 0 for image path:" < you can run this code with multiple images (1) or single image (0) >
• Enter a ref. image path: < target image path (e.g. H&E path), it should be a directory path containing reference images when you choose 1 above >
• Enter a moving image path: < source image path (e.g. IHC path), it should be a directory path containing source images when you choose 1 above >
• Enter an output path: < registered image path, it should be a directory path containing output images when you choose 1 above >

Inside code

• prefix : output directory
• fixed_path : target image path (e.g. H&E path)
• moving_path : source image path (e.g. IHC path)

2. Coordinating Between Source and Target Slides

• Instructions: Check out the usage guide here.

• Demonstration: See this example.

• Visualizing Mapped Tiles: To display the mapped tiles on a new canvas for reverse engineering, refer to this example.

License

© This project is licensed under Apache License Version 2.0 - see the LICENSE file for details.

Contact

Reach out to the Hwang Lab.