added some functionalities for ungaged catchments #1745
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| name: xHydro Testing Suite | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - .cruft.json | |
| - CHANGELOG.rst | |
| - README.rst | |
| - pyproject.toml | |
| - tests/test_xhydro.py | |
| - src/xhydro/__init__.py | |
| pull_request: | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| - labeled | |
| - unlabeled | |
| pull_request_review: | |
| types: | |
| - submitted | |
| - edited | |
| concurrency: | |
| # For a given workflow, if we push to the same branch, cancel all previous builds on that branch except on master. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ github.ref != 'refs/heads/main' }} | |
| permissions: | |
| contents: read | |
| jobs: | |
| lint: | |
| name: Lint (Python${{ matrix.python-version }}) | |
| runs-on: ubuntu-latest | |
| if: | | |
| ((github.event_name == 'pull_request') && (github.event.action != 'labeled')) || | |
| (github.event.review.state == 'approved') || | |
| (github.event_name == 'push') | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.x" | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
| with: | |
| disable-sudo: true | |
| egress-policy: block | |
| allowed-endpoints: > | |
| files.pythonhosted.org:443 | |
| github.com:443 | |
| pypi.org:443 | |
| - name: Checkout Repository | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
| - name: Set up Python${{ matrix.python-version }} | |
| uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| - name: Install CI libraries | |
| run: | | |
| python -m pip install --require-hashes -r CI/requirements_ci.txt | |
| - name: Environment Caching | |
| uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a # v4.1.2 | |
| with: | |
| path: .tox | |
| key: ${{ matrix.os }}-Python${{ matrix.python-version }}-${{ hashFiles('pyproject.toml', 'tox.ini') }} | |
| - name: Run linting suite | |
| run: | | |
| python -m tox -e lint | |
| test-preliminary: | |
| name: Preliminary Tests (Python${{ matrix.python-version }}, ${{ matrix.os }}) | |
| needs: lint | |
| if: | | |
| (github.event_name == 'pull_request') && !contains(github.event.pull_request.labels.*.name, 'approved') | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ 'ubuntu-latest' ] | |
| python-version: [ "3.10" ] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
| with: | |
| disable-sudo: true | |
| egress-policy: block | |
| allowed-endpoints: > | |
| ai4edataeuwest.blob.core.windows.net:443 | |
| cdn.proj.org:443 | |
| conda.anaconda.org:443 | |
| elevationeuwest.blob.core.windows.net:443 | |
| files.pythonhosted.org:443 | |
| github.com:443 | |
| objects.githubusercontent.com:443 | |
| planetarycomputer.microsoft.com:443 | |
| pypi.org:443 | |
| raw.githubusercontent.com:443 | |
| s3.us-east-2.wasabisys.com:443 | |
| s3.wasabisys.com:443 | |
| - name: Checkout Repository | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
| - name: Setup Conda (Micromamba) with Python${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@617811f69075e3fd3ae68ca64220ad065877f246 # v2.0.0 | |
| with: | |
| cache-downloads: true | |
| cache-environment: false | |
| environment-file: environment-dev.yml | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| micromamba-version: "1.5.10-0" # pinned to avoid the breaking changes with mamba and micromamba (2.0.0). | |
| - name: Install xHydro | |
| run: | | |
| python -m pip install --no-deps . | |
| - name: Check versions | |
| run: | | |
| micromamba list | |
| echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'") | |
| python -m pip check || true | |
| - name: Test with pytest | |
| run: | | |
| make test | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| test-conda: | |
| name: Test with Python${{ matrix.python-version }} (Anaconda, ${{ matrix.os }}) | |
| needs: lint | |
| if: | | |
| contains(github.event.pull_request.labels.*.name, 'approved') || | |
| (github.event.review.state == 'approved') || | |
| (github.event_name == 'push') | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ 'ubuntu-latest' ] | |
| python-version: [ "3.10", "3.11", "3.12" ] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
| with: | |
| disable-sudo: true | |
| egress-policy: block | |
| allowed-endpoints: > | |
| ai4edataeuwest.blob.core.windows.net:443 | |
| cdn.proj.org:443 | |
| conda.anaconda.org:443 | |
| coveralls.io:443 | |
| elevationeuwest.blob.core.windows.net:443 | |
| files.pythonhosted.org:443 | |
| github.com:443 | |
| objects.githubusercontent.com:443 | |
| planetarycomputer.microsoft.com:443 | |
| pypi.org:443 | |
| raw.githubusercontent.com:443 | |
| s3.us-east-2.wasabisys.com:443 | |
| s3.wasabisys.com:443 | |
| - name: Checkout Repository | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
| - name: Setup Conda (Micromamba) with Python${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@617811f69075e3fd3ae68ca64220ad065877f246 # v2.0.0 | |
| with: | |
| cache-downloads: true | |
| cache-environment: false | |
| environment-file: environment-dev.yml | |
| create-args: >- | |
| lmoments3 | |
| python=${{ matrix.python-version }} | |
| micromamba-version: "1.5.10-0" # pinned to avoid the breaking changes with mamba and micromamba (2.0.0). | |
| - name: Install xHydro | |
| run: | | |
| python -m pip install --no-deps . | |
| - name: Check versions | |
| run: | | |
| micromamba list | |
| echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'") | |
| python -m pip check || true | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest --cov xhydro | |
| - name: Report Coverage | |
| run: | | |
| python -m coveralls | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: run-Python${{ matrix.python-version }}-conda | |
| COVERALLS_PARALLEL: true | |
| COVERALLS_SERVICE_NAME: github | |
| test-notebooks: | |
| name: Test Notebooks (Python${{ matrix.python-version }}, ${{ matrix.os }}) | |
| needs: lint | |
| if: | | |
| contains(github.event.pull_request.labels.*.name, 'notebooks') || | |
| contains(github.event.pull_request.labels.*.name, 'approved') || | |
| (github.event.review.state == 'approved') || | |
| (github.event_name == 'push') | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ 'ubuntu-latest' ] | |
| python-version: [ "3.10", "3.11", "3.12" ] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
| with: | |
| disable-sudo: true | |
| egress-policy: block | |
| allowed-endpoints: > | |
| ai4edataeuwest.blob.core.windows.net:443 | |
| cdn.proj.org:443 | |
| conda.anaconda.org:443 | |
| elevationeuwest.blob.core.windows.net:443 | |
| files.pythonhosted.org:443 | |
| github.com:443 | |
| objects.githubusercontent.com:443 | |
| planetarycomputer.microsoft.com:443 | |
| pypi.org:443 | |
| raw.githubusercontent.com:443 | |
| s3.us-east-2.wasabisys.com:443 | |
| s3.wasabisys.com:443 | |
| - name: Checkout Repository | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
| - name: Setup Conda (Micromamba) with Python${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| cache-downloads: true | |
| cache-environment: false | |
| environment-file: environment-dev.yml | |
| create-args: >- | |
| lmoments3 | |
| python=${{ matrix.python-version }} | |
| micromamba-version: "1.5.10-0" # pinned to avoid the breaking changes with mamba and micromamba (2.0.0). | |
| - name: Install xHydro | |
| run: | | |
| python -m pip install --no-deps . | |
| - name: Check versions | |
| run: | | |
| micromamba list | |
| echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'") | |
| python -m pip check || true | |
| - name: Test Notebooks | |
| run: | | |
| make test-notebooks-lax | |
| # test-ESMF-source: | |
| # name: Tests using ESMF from sources (Python${{ matrix.python-version }}) | |
| # needs: lint | |
| # if: | | |
| # contains(github.event.pull_request.labels.*.name, 'approved') || | |
| # (github.event.review.state == 'approved') || | |
| # (github.event_name == 'push') | |
| # runs-on: ubuntu-latest | |
| # env: | |
| # ESMF_VERSION: "v8.5.0" | |
| # strategy: | |
| # matrix: | |
| # include: | |
| # - python-version: "3.9" | |
| # steps: | |
| # - uses: actions/checkout@v4.1.1 | |
| # - name: Install NetCDF | |
| # run: | | |
| # sudo apt-get -y update | |
| # sudo apt install libnetcdf-dev libnetcdff-dev | |
| # - name: Install ESMF | |
| # uses: esmf-org/install-esmf-action@v1 | |
| # env: | |
| # ESMF_NETCDF: nc-config | |
| # with: | |
| # cache: true | |
| # version: ${{ env.ESMF_VERSION }} | |
| # - name: Set up Python${{ matrix.python-version }} | |
| # uses: actions/setup-python@v4.7.1 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Install xhydro (with esmpy) | |
| # run: | | |
| # python -m pip install flit | |
| # make dev | |
| # env: | |
| # ESMF_VERSION: ${{ env.ESMF_VERSION }} | |
| # - name: Check versions | |
| # run: | | |
| # python -m pip list | |
| # echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'") | |
| # python -m pip check || true | |
| # - name: Test with pytest | |
| # run: | | |
| # make test | |
| # env: | |
| # GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| finish: | |
| needs: | |
| - test-conda | |
| - test-notebooks | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
| with: | |
| disable-sudo: true | |
| egress-policy: audit | |
| - name: Coveralls Finished | |
| uses: coverallsapp/github-action@cfd0633edbd2411b532b808ba7a8b5e04f76d2c8 # v2.3.4 | |
| with: | |
| parallel-finished: true |