Conditionally Run Notebooks #291
Workflow file for this run
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| name: xHydro Testing Suite | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - CHANGES.rst | |
| - README.rst | |
| - pyproject.toml | |
| - xhydro/__init__.py | |
| pull_request: | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| pull_request_review: | |
| types: | |
| - submitted | |
| jobs: | |
| lint: | |
| name: Lint (Python${{ matrix.python-version }}) | |
| runs-on: ubuntu-latest | |
| if: | | |
| ((github.event_name == 'pull_request') && (github.event.action != 'labeled')) || | |
| (github.event.review.state == 'approved') || | |
| (github.event_name == 'push') | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.x" | |
| steps: | |
| - name: Cancel previous runs | |
| uses: styfle/cancel-workflow-action@0.11.0 | |
| with: | |
| access_token: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install tox | |
| run: | | |
| python -m pip install tox | |
| - name: Run linting suite | |
| run: | | |
| python -m tox -e lint | |
| test-pypi: | |
| name: test-${{ matrix.tox-env }} (Python${{ matrix.python-version }}) | |
| needs: lint | |
| if: | | |
| (github.event_name == 'pull_request') && !contains(github.event.pull_request.labels.*.name, 'approved') | |
| runs-on: ubuntu-latest | |
| env: | |
| ESMF_VERSION: "v8.5.0" | |
| strategy: | |
| matrix: | |
| include: | |
| - tox-env: "py39" | |
| python-version: "3.9" | |
| steps: | |
| - uses: actions/checkout@v4.1.1 | |
| - name: Install NetCDF | |
| run: | | |
| sudo apt-get -y update | |
| sudo apt install libnetcdf-dev libnetcdff-dev | |
| - name: Install ESMF | |
| uses: esmf-org/install-esmf-action@v1 | |
| env: | |
| ESMF_NETCDF: nc-config | |
| with: | |
| cache: true | |
| version: ${{ env.ESMF_VERSION }} | |
| - name: Set up Python${{ matrix.python-version }} | |
| uses: actions/setup-python@v4.7.1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install xhydro (with esmpy) | |
| run: | | |
| make dev | |
| env: | |
| ESMF_VERSION: ${{ env.ESMF_VERSION }} | |
| - name: Check versions | |
| run: | | |
| python -m pip list | |
| echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'") | |
| python -m pip check || true | |
| - name: Test with pytest | |
| run: | | |
| make test | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| test-conda: | |
| name: Test with Python${{ matrix.python-version }} (Anaconda) | |
| needs: lint | |
| if: | | |
| contains(github.event.pull_request.labels.*.name, 'approved') || | |
| (github.event.review.state == 'approved') || | |
| (github.event_name == 'push') | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Conda (Micromamba) with Python${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-downloads: true | |
| environment-file: environment-dev.yml | |
| create-args: >- | |
| mamba | |
| python=${{ matrix.python-version }} | |
| - name: Conda and Mamba versions | |
| run: | | |
| mamba --version | |
| echo "micromamba $(micromamba --version)" | |
| - name: Install xHydro | |
| run: | | |
| python -m pip install --no-deps . | |
| - name: Check versions | |
| run: | | |
| conda list | |
| echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'") | |
| python -m pip check || true | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest --cov xhydro | |
| - name: Report coverage | |
| run: | | |
| python -m coveralls | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: run-Python${{ matrix.python-version }}-conda | |
| COVERALLS_PARALLEL: true | |
| COVERALLS_SERVICE_NAME: github | |
| test-notebooks: | |
| name: Test Notebooks | |
| needs: lint | |
| if: | | |
| contains(github.event.pull_request.labels.*.name, 'approved') || | |
| (github.event.review.state == 'approved') || | |
| (github.event_name == 'push') | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.11"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Conda (Micromamba) with Python${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-downloads: true | |
| environment-file: environment-dev.yml | |
| create-args: >- | |
| mamba | |
| python=${{ matrix.python-version }} | |
| - name: Conda and Mamba versions | |
| run: | | |
| mamba --version | |
| echo "micromamba $(micromamba --version)" | |
| - name: Install xHydro | |
| run: | | |
| python -m pip install --no-deps . | |
| - name: Check versions | |
| run: | | |
| conda list | |
| echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'") | |
| python -m pip check || true | |
| - name: Test Notebooks | |
| run: | | |
| make test-notebooks | |
| finish: | |
| needs: | |
| - test-conda | |
| - test-notebooks | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Coveralls Finished | |
| run: | | |
| python -m pip install --upgrade coveralls | |
| python -m coveralls --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_SERVICE_NAME: github |