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xHydro Testing Suite

Conditionally Run Notebooks #293

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Conditionally Run Notebooks

Conditionally Run Notebooks #293

Workflow file for this run

.github/workflows/main.yml at 519a6df
name: xHydro Testing Suite
on:
push:
branches:
- main
paths-ignore:
- CHANGES.rst
- README.rst
- pyproject.toml
- xhydro/__init__.py
pull_request:
types:
- opened
- reopened
- synchronize
pull_request_review:
types:
- submitted
jobs:
lint:
name: Lint (Python${{ matrix.python-version }})
runs-on: ubuntu-latest
if: |
((github.event_name == 'pull_request') && (github.event.action != 'labeled')) ||
(github.event.review.state == 'approved') ||
(github.event_name == 'push')
strategy:
matrix:
python-version:
- "3.x"
steps:
- name: Cancel previous runs
uses: styfle/cancel-workflow-action@0.11.0
with:
access_token: ${{ secrets.GITHUB_TOKEN }}
- uses: actions/checkout@v4
- name: Set up Python${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install tox
run: |
python -m pip install tox
- name: Run linting suite
run: |
python -m tox -e lint
test-preliminary:
name: Preliminary Tests (Python${{ matrix.python-version }})
needs: lint
if: |
(github.event_name == 'pull_request') && !contains(github.event.pull_request.labels.*.name, 'approved')
runs-on: ubuntu-latest
strategy:
matrix:
include:
- python-version: "3.9"
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
- name: Setup Conda (Micromamba) with Python${{ matrix.python-version }}
uses: mamba-org/setup-micromamba@v1
with:
cache-downloads: true
environment-file: environment-dev.yml
create-args: >-
mamba
python=${{ matrix.python-version }}
- name: Conda and Mamba versions
run: |
mamba --version
echo "micromamba $(micromamba --version)"
- name: Install xHydro
run: |
python -m pip install --no-deps .
- name: Check versions
run: |
conda list
echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'")
python -m pip check || true
- name: Test with pytest
run: |
make test
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
test-conda:
name: Test with Python${{ matrix.python-version }} (Anaconda)
needs: lint
if: |
contains(github.event.pull_request.labels.*.name, 'approved') ||
(github.event.review.state == 'approved') ||
(github.event_name == 'push')
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.9", "3.10", "3.11"]
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
- name: Setup Conda (Micromamba) with Python${{ matrix.python-version }}
uses: mamba-org/setup-micromamba@v1
with:
cache-downloads: true
environment-file: environment-dev.yml
create-args: >-
mamba
python=${{ matrix.python-version }}
- name: Conda and Mamba versions
run: |
mamba --version
echo "micromamba $(micromamba --version)"
- name: Install xHydro
run: |
python -m pip install --no-deps .
- name: Check versions
run: |
conda list
echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'")
python -m pip check || true
- name: Test with pytest
run: |
python -m pytest --cov xhydro
- name: Report coverage
run: |
python -m coveralls
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_FLAG_NAME: run-Python${{ matrix.python-version }}-conda
COVERALLS_PARALLEL: true
COVERALLS_SERVICE_NAME: github
test-notebooks:
name: Test Notebooks
needs: lint
if: |
contains(github.event.pull_request.labels.*.name, 'approved') ||
(github.event.review.state == 'approved') ||
(github.event_name == 'push')
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.9", "3.10", "3.11"]
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
- name: Setup Conda (Micromamba) with Python${{ matrix.python-version }}
uses: mamba-org/setup-micromamba@v1
with:
cache-downloads: true
environment-file: environment-dev.yml
create-args: >-
mamba
python=${{ matrix.python-version }}
- name: Conda and Mamba versions
run: |
mamba --version
echo "micromamba $(micromamba --version)"
- name: Install xHydro
run: |
python -m pip install --no-deps .
- name: Check versions
run: |
conda list
echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'")
python -m pip check || true
- name: Test Notebooks
run: |
make test-notebooks
test-ESMF-source:
name: Tests using ESMF from sources (Python${{ matrix.python-version }})
needs: lint
if: |
contains(github.event.pull_request.labels.*.name, 'approved') ||
(github.event.review.state == 'approved') ||
(github.event_name == 'push')
runs-on: ubuntu-latest
env:
ESMF_VERSION: "v8.5.0"
strategy:
matrix:
include:
- python-version: "3.9"
steps:
- uses: actions/checkout@v4.1.1
- name: Install NetCDF
run: |
sudo apt-get -y update
sudo apt install libnetcdf-dev libnetcdff-dev
- name: Install ESMF
uses: esmf-org/install-esmf-action@v1
env:
ESMF_NETCDF: nc-config
with:
cache: true
version: ${{ env.ESMF_VERSION }}
- name: Set up Python${{ matrix.python-version }}
uses: actions/setup-python@v4.7.1
with:
python-version: ${{ matrix.python-version }}
- name: Install xhydro (with esmpy)
run: |
python -m pip install flit
make dev
env:
ESMF_VERSION: ${{ env.ESMF_VERSION }}
- name: Check versions
run: |
python -m pip list
echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'")
python -m pip check || true
- name: Test with pytest
run: |
make test
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
finish:
needs:
- test-conda
- test-notebooks
runs-on: ubuntu-latest
container: python:3-slim
steps:
- name: Coveralls Finished
run: |
python -m pip install --upgrade coveralls
python -m coveralls --finish
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_SERVICE_NAME: github